Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq7 131 2e-25 seq3 102 1e-16 >seq7 Length=1057013 Score = 131 bits (144), Expect = 2e-25 Identities = 318/470 (68%), Gaps = 25/470 (5%) Strand=Plus/Plus Query 172529 TGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTG 172588 ||| ||||| |||||||| |||||||||||||| || || ||| |||||| || | Sbjct 915695 TGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGA-TA 915753 Query 172589 TG-ATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTAC 172647 || || | ||||| | || |||| || || ||| ||| ||| ||||| | |||| Sbjct 915754 TGCATGCTGATTATAAAGATAAAGGTGTTGATCAACTAA---AAAATATTATAAATTTAA 915810 Query 172648 ---AAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGT---TGGAATGTACCTCAAC 172701 ||||| | || | ||||| | || || || || || ||||||||| | Sbjct 915811 TTAAAAACGATCCGACATGTAGACGAAT--TATTTTAT-GTGCATGGAATGTAAAAGATT 915867 Query 172702 TTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCA--Gaaaaaa 172759 | ||| |||||| | || ||||| |||| |||| ||||||||||| || || Sbjct 915868 TAGATCAAATGGCATTACCCCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 915927 Query 172760 aTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTA 172819 | ||| | ||| | ||||||||||| ||||||||| | || || || | Sbjct 915928 AATTATCATGTATTATG-----TATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATT 915982 Query 172820 TAATATTGGATTTTATTC-ATTTTTA-ATACTTGTGTTAAGTAAATGGTGCAATTTAACT 172877 ||||||| | ||||| || |||| ||| | || || || || |||||| Sbjct 915983 CAATATTGCTTCCTATTCTATATTTACATA--TATGATAGCACAAGTATGTAATTTACAA 916040 Query 172878 CCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCT 172937 |||| | ||||||||| || ||| ||| ||| || ||| |||||||||||| Sbjct 916041 CCAGCTGAATTTATTCATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGC 916100 Query 172938 TTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATT 172987 ||||| ||||| ||||| |||| ||| ||| |||| || | | ||||||| Sbjct 916101 TTAAAAGTTCAGTTAAATAGAACACCCTATCCTTTCCCTAGTCTTAAATT 916150 >seq3 Length=540481 Score = 102 bits (112), Expect = 1e-16 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 194586 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 194645 |||||| |||||||| ||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 418789 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 418848 Query 194646 GCATGCTAGAAGTCATGGGCAAGTAACTACT-TTACATCGACAACCAAATTGTGGTCGTT 194704 ||||| |||||| || | |||||| ||||| ||||||||| || | | Sbjct 418849 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACAA-GACAACCAACAGAAGGAAGAT 418907 Query 194705 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 194764 | || ||| |||||||||||||||||||||||| ||| ||||| || ||||| Sbjct 418908 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAACGAGATTGTATGATATCTCATGGAT 418967 Query 194765 CTACTCAATTCTTAAATGAA 194784 || || || | ||||| ||| Sbjct 418968 CTGCTAAAATGTTAAAGGAA 418987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632484374054680