Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6 140 3e-28 seq11 129 5e-25 >seq6 Length=831307 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| ||||||| ||||| || || || || || ||| | || Sbjct 381155 ATGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 381214 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || |||||||| |||||||| || ||||| |||||| Sbjct 381215 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCTGATCAA 381274 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || || |||||||| ||||| | || ||| |||| | || || || ||| Sbjct 381275 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 381334 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| |||||||| ||||||| || || |||| | ||||| Sbjct 381335 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 381381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 ||| || |||| || || || || ||||| || || | ||||| | |||||| Sbjct 423903 AATGGACGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACA 423844 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 ||| ||||||||||| || || || |||||||||| ||| || ||| ||||| || Sbjct 423843 ACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATTACATGC 423784 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 |||||| || | |||||| ||| |||||||| | ||| Sbjct 423783 ATCTTTATATAACATATATGGTACACCAGTTTCTATTTG 423745 >seq11 Length=1635978 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| ||||||| ||||| || || || || || ||| | | Sbjct 1474744 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCT 1474685 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| ||| |||||||| ||||||||||| || || |||||| Sbjct 1474684 GATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAA 1474625 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || || || || || ||||| | || ||| |||| | || || |||||| Sbjct 1474624 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTATAAC 1474565 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| || || || |||| ||||| Sbjct 1474564 ATTCAAAAAGAGTCAACCTTACATTTGGT 1474536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893882721080