Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 >seq6 Length=831307 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||||||||||| ||||| || || | || || || | Sbjct 381155 ATGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 381214 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || || || |||||||| | || |||||| Sbjct 381215 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCTGATCAA 381274 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || ||||| | || |||| |||||| | | || |||||| Sbjct 381275 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 381334 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || || ||| | || |||||| | |||| || Sbjct 381335 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 381381 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| |||||||| ||||| ||||| | || || || Sbjct 381383 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 381442 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || ||| || |||||||| | || ||||| Sbjct 381443 GATACTATTGAAAACGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 381502 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | |||| ||| || ||||| | || || | |||||| | | |||||||| Sbjct 381503 CAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGATTACAAT 381562 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||||||||| || || | || |||||| | |||| || Sbjct 381563 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 381609 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 || |||||||| | || |||||||||||| | |||| || || ||||| | ||| Sbjct 381020 GATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAG 381079 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| | | |||||||| ||||||||||||||||| || ||| | || ||| Sbjct 381080 GATGGAAGAACACTATCTGATTACAATATTCAAAAAGAATCTACCTTACACTTAGTTTTA 381139 Query 110486 AGACTGCGAGGGGG 110499 ||| | |||| || Sbjct 381140 AGATTAAGAGGAGG 381153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838274173873