Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq6 219 7e-52 seq11 176 7e-39 >seq6 Length=831307 Score = 219 bits (242), Expect = 7e-52 Identities = 187/228 (82%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || ||||||||||||| ||||||||||||||| ||||||| ||| ||| | Sbjct 381384 TGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA- 381442 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| |||| || ||| |||||| ||| ||||||||| || ||||| ||||| Sbjct 381443 GATACTATTGAAAACGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 381502 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| || | |||||||| || ||||||||||| || |||||| ||| | ||||| ||| Sbjct 381503 CAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGATTACAAT 381562 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || ||||||||||| || | |||||||| ||| |||||||||||||| Sbjct 381563 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGGT 381610 Score = 217 bits (240), Expect = 2e-51 Identities = 185/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| ||||| ||||||||||| ||| ||||||| |||| || Sbjct 381156 TGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCCG 381215 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| ||| ||||||||| ||||| || ||||||| Sbjct 381216 ATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCTGATCAAC 381275 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||||||||| ||| |||||| || | || || || | Sbjct 381276 AAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAACA 381335 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||||||| | || ||||| ||| ||||||||||||||| Sbjct 381336 TTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGGTA 381383 Score = 192 bits (212), Expect = 9e-44 Identities = 167/205 (81%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 146056 CAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAATGTAAAAAAT 146114 ||||||||||||||||| ||||||| ||| ||| | ||||||||| |||| || ||| | Sbjct 380952 CAGGAAAAACAATTACTCTTGATGTTGAACCATCA-GATACTATTGAAAACGTTAAAGCT 381010 Query 146115 AAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAA 146174 ||||| ||| ||||||||| || ||||| |||||||||||| | ||||| || || ||| Sbjct 381011 AAAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTCGCTGGAAAA 381070 Query 146175 CAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCAT 146234 |||||||| ||| ||||| || | ||||| ||||| ||||||||||| || | || Sbjct 381071 CAATTAGAGGATGGAAGAACACTATCTGATTACAATATTCAAAAAGAATCTACCTTACAC 381130 Query 146235 TTAGTATTACGATTAAGAGGAGGTA 146259 ||||| ||| ||||||||||||||| Sbjct 381131 TTAGTTTTAAGATTAAGAGGAGGTA 381155 >seq11 Length=1635978 Score = 176 bits (194), Expect = 7e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| ||||||||||| ||| ||||||| |||| | Sbjct 1474743 TGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCTG 1474684 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| ||||| ||| ||||||||| ||||| || ||||||| Sbjct 1474683 ATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAAC 1474624 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || || ||||||||||| ||| ||||| ||| | || ||||| | Sbjct 1474623 AAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTATAACA 1474564 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTA 146243 | |||||||| || || | ||||| ||| || Sbjct 1474563 TTCAAAAAGAGTCAACCTTACATTTGGTAATA 1474532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786159904300120