Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq11 150 1e-31 seq6 138 9e-28 >seq11 Length=1635978 Score = 150 bits (166), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| | || || ||||||||||||||||| || | | || | ||| || Sbjct 1474536 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1474595 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| ||||| | || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 1474596 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1474655 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | |||| ||| ||| |||| | || ||||| |||| || |||||||| || ||||| Sbjct 1474656 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1474715 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATTTT--AAAACGTA 29797 || ||||| ||||| ||||| || |||||||| ||||||| Sbjct 1474716 CCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAACGTA 1474757 >seq6 Length=831307 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | | || ||||| | || |||||||||||||| || ||||| | Sbjct 381609 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGAT 381550 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || || | |||||| |||||| | || |||| ||||||||| || || Sbjct 381549 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGG 381490 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| |||||| | ||| || |||| | ||| || || |||| || Sbjct 381489 ATACCTTCTTTATCTTG-AATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 381431 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || ||||| || ||||| ||||| ||||| || ||||| Sbjct 381430 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || ||||||||||||||||| || || | | || | | ||| || | |||||| || Sbjct 381351 GTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCG 381292 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | || |||||||| ||||| || |||||||| ||||| ||||| | ||| ||| Sbjct 381291 GCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGGATTTTAGCTTTA 381232 Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769 ||| |||| | || || || |||| || |||||||| || ||||| || ||||| ||| Sbjct 381231 ACATTTTCAATGGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAAAGTT 381172 Query 29770 TTAACAAATATCTGCAT 29786 || || || |||||||| Sbjct 381171 TTTACGAAAATCTGCAT 381155 Score = 104 bits (114), Expect = 2e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || |||||||||||||| || ||||| | | || | ||| || | |||||| ||| Sbjct 381123 GTAGATTCTTTTTGAATATTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCA 381064 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 || | || |||||||| ||||| || || ||||| ||||| ||||| |||||| | ||| Sbjct 381063 GCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTG-AATTTTAGCTTT 381005 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 || |||| | ||| || || |||| || |||||||| || ||||| || Sbjct 381004 AACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCC 380954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216096698201