Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq7 134 2e-26 seq3 105 8e-18 seq6 95.1 2e-14 seq13 82.4 1e-10 >seq7 Length=1057013 Score = 134 bits (148), Expect = 2e-26 Identities = 314/467 (67%), Gaps = 19/467 (4%) Strand=Plus/Plus Query 168656 TGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTG 168715 ||| |||||||||||||| |||||||||||||| || || ||| |||||| || | Sbjct 915695 TGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGA-TA 915753 Query 168716 TG-ATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTAC 168774 || || | ||||| | | |||| || || ||| ||| | | ||||||| | Sbjct 915754 TGCATGCTGATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATTTAATTA 915813 Query 168775 ACAACAATCCGGAAAATAGAAGAATATTAATTAATAGT---TGGGATGTACCACAACTTG 168831 | ||| ||||| | |||| |||| || || || || ||| ||||| | | | | Sbjct 915814 AAAACGATCCGACATGTAGACGAAT--TATTTTAT-GTGCATGGAATGTAAAAGATTTAG 915870 Query 168832 ATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTA----AGGAAAAAA 168887 || |||||| | ||||||||||| | |||| ||||||||||| | | |||| Sbjct 915871 ATCAAATGGCATTACCCCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAAT 915930 Query 168888 TCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTAT 168947 | ||| | ||| | |||||||||||| ||||||||| | || || || | Sbjct 915931 T--ATCATGTATTAT-----GTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTC 915983 Query 168948 AATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTAATTTGACGCCT 169007 ||||||| | ||||| | || ||| | || || || |||||||| || Sbjct 915984 AATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCA 916043 Query 169008 GGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTTA 169067 | | ||||||||| || ||| ||| ||| || ||| || ||||||||| ||| Sbjct 916044 GCTGAATTTATTCATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGCTTA 916103 Query 169068 AAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATT 169114 || ||||| || || |||| ||| ||| |||| || | | ||||||| Sbjct 916104 AAAGTTCAGTTAAATAGAACACCCTATCCTTTCCCTAGTCTTAAATT 916150 >seq3 Length=540481 Score = 105 bits (116), Expect = 8e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193790 TAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 193849 |||||| |||||||| ||||| | |||||| | | ||||||||||| | |||||||| Sbjct 418789 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 418848 Query 193850 GCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193908 ||||| |||||| |||| | |||| ||||| ||||||||| || | | Sbjct 418849 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 418907 Query 193909 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTG 193968 | || ||| ||||||||||||||||||||||| ||| ||||| || |||||| Sbjct 418908 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAACGAGATTGTATGATATCTCATGGAT 418967 Query 193969 CTACTCAATTCTTGAATGAA 193988 || || || | || || ||| Sbjct 418968 CTGCTAAAATGTTAAAGGAA 418987 >seq6 Length=831307 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853 |||||||| || |||| |||||||| | |||||||||||| | |||||||| ||| Sbjct 177825 ATTTTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 177766 Query 193854 GCTAGAAGTC-ATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCA 193912 |||||| || | || | || | | || ||| |||||||||| | ||||| || | Sbjct 177765 GCTAGATCTCGAGGGCCTAGGCAATTATTAACA-CGACAACCAACTGAAGGTCGATCAAA 177707 Query 193913 AGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTG 193951 || ||||| |||||| |||| |||||||| | ||| || Sbjct 177706 AGAAGGAGGATTAAGACTTGGTGAAATGGAAAGAGATTG 177668 >seq13 Length=2809497 Score = 82.4 bits (90), Expect = 1e-10 Identities = 149/209 (71%), Gaps = 18/209 (9%) Strand=Plus/Minus Query 51838 AAGTTGGAGACTTGGTTAAAAGACA-ATTGATGGATGGTGATGATGTACTATTAAATAGG 51896 || |||| || | || ||||||| ||| || |||||||| |||| |||| ||||| Sbjct 1679680 AAATTGGTGATATAGTAGAAAGACATATTTGTG-ATGGTGATATTGTATTATTTAATAGA 1679622 Query 51897 CAACCAAC---ACTTCATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTA 51953 |||||| | || || || | |||| || ||||| | | || | | || Sbjct 1679621 CAACCATCTTTACATCGTATGTCAATTATGT---GTCATAAAGCTCGAGTT-ATGGATTA 1679566 Query 51954 -AAAACATTTAA----AATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATG 52008 ||||||||| ||||||| || |||| || |||||||||| |||||||||| Sbjct 1679565 TAAAACATTTCGCTTTAATGAATGTG--TATG--TAGTCCATATAATGCAGATTTTGATG 1679510 Query 52009 GGGATGAAATGAATTTACATGTTCCTCAA 52037 |||||||||||||||||||||| |||||| Sbjct 1679509 GGGATGAAATGAATTTACATGTACCTCAA 1679481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635172351845080