Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq7 123 3e-23 seq10 113 6e-20 seq3 104 3e-17 seq6 89.7 7e-13 >seq7 Length=1057013 Score = 123 bits (136), Expect = 3e-23 Identities = 425/644 (66%), Gaps = 23/644 (4%) Strand=Plus/Plus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 ||||| ||||||||||| ||| | ||| | | |||||||||||| || ||| ||| | Sbjct 915499 AATTTAATTTAAGTGAAT--ATTTT-CCATTATTAACAACAAAAAAATTA-TTTGTAAGA 915554 Query 180417 A-TATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAAT 180475 ||| || |||| || |||||| | || | || ||||||| ||| || Sbjct 915555 GGTATCATTGAAGAGTTGTTATGGTTTATAAGGGGAGAAACAAATGGAAATACACTATTA 915614 Query 180476 GATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGA 180535 || | ||| | | | ||| | | |||||| | | ||||||||||| | | | Sbjct 915615 GAAAAAAATGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAA 915674 Query 180536 TTTCATTT--TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATG 180593 || |||| | || ||| ||| ||||| |||||||| |||||||||||||| || Sbjct 915675 TT--ATTTCATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACT 915732 Query 180594 CAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAATTA 180652 || ||| |||||| || | || || | | |||| | ||||| | || ||| || Sbjct 915733 TTGGTGCTGAATATACAGA-TATGCATGCTGATTATAAAGATAAAGGTGTTGATCAACTA 915791 Query 180653 AGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGT 180712 | | ||||| | || ||||| |||| ||| || |||| || || | Sbjct 915792 AAAAATATTATAAATTTAATTAAAAACGATCCGACATGTAGACGAATTATTTTATGTGCA 915851 Query 180713 TGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTT 180772 ||||||||| | | ||| | ||||| | || || ||||| ||| |||||| Sbjct 915852 TGGAATGTAAAAGATTTAGATCAAATGGCATTACCCCCTTGTCATATTTTATGTCAATTT 915911 Query 180773 TATGTTAGAAATA-AAATTTATTTAG-ATTGCCAATTGTATCAAAGATCTGCAGATTTAG 180830 |||||| || ||| |||| | ||| |||||||||||||| ||||||| Sbjct 915912 TATGTTTTTGATGGAAAATTATCATGTATTA-----TGTATCAAAGATCTTGTGATTTAG 915966 Query 180831 GATTAGGTGTACCATATAATATTGCTTTCTATTC-AT-TTTTGGTATGTGTTCTCTCAAA 180888 | | ||||| |||| |||||||||| |||||| || ||| ||| || | | | || Sbjct 915967 GTCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGATAGCAC-AA 916025 Query 180889 GTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTC 180948 || || |||||| || | |||||||||| || || ||| |||||| ||| Sbjct 916026 GT-ATGTAATTTACAACCAGCTGAATTTATTCATGTATTGGGAAATGCTCATGTTTATAA 916084 Query 180949 TAACCATATTGACCAATTAAAAATTCAATTAAGCAGAA-ACCCT 180991 ||| ||| |||| |||||| |||| |||| |||| ||||| Sbjct 916085 TAATCATGTTGAAAGCTTAAAAGTTCAGTTAAATAGAACACCCT 916128 >seq10 Length=1513010 Score = 113 bits (124), Expect = 6e-20 Identities = 255/380 (67%), Gaps = 14/380 (4%) Strand=Plus/Plus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 ||| || |||||| | |||||| ||||||||||| | || ||| | ||||||||| Sbjct 454530 TAAAGTCGCTCAGCTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGTGAATC 454589 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | ||||||| ||||| | || || ||||| ||| |||| || |||| Sbjct 454590 ATCATTACAACAAACTATTATAAATATGGCGCAAACATTTGTCGGTTCAAACAATATAAA 454649 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || || ||||| ||| || ||||||| |||| ||||| ||||||||| || | || Sbjct 454650 TTTTCTAGAACCCTGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCAGC 454709 Query 173068 ATCAAGGTATATTTATACTAAAC-CGCATAAAATTTTAAAATATATATTTAGAGAAGAAG 173126 | | |||||||| | ||| |||| |||| | | || || |||||||| ||| | Sbjct 454710 AGCTAGGTATATATTTACAAAACTTGCATCATCTACTAGAA-GTATATTTAATGAATTTG 454768 Query 173127 ATGACCCTATTTTAA---TTTTTACTCCGGAAGGAGAA-----CCAACCAC----TTTTG 173174 | || || ||||||| ||| | | |||||| || | |||||| || | Sbjct 454769 ACGATCCAATTTTAAAATATTTAAATGAAGAAGGACAAAAAATCGAACCACAATATTATA 454828 Query 173175 TTCCCGTGATCCCTCTTATATTAATTAATGGTTCAATTGGTATAGGAACTGGATGGTCGT 173234 | || || || ||| || || | ||||| | || ||||||||||||| || | Sbjct 454829 TACCAGTTATTCCTACAATTCTAGTAAATGGATGTGAAGGAATAGGAACTGGATATTCAT 454888 Query 173235 GTTTTATTCCTCAATATAAT 173254 |||||||| | |||||| Sbjct 454889 CATTTATTCCAAACTATAAT 454908 >seq3 Length=540481 Score = 104 bits (114), Expect = 3e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 201917 TAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 201976 |||||| |||||||| ||||||| ||||| | | ||||||||||| | |||||||| Sbjct 418789 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 418848 Query 201977 GCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGT 202035 ||||| |||||| || | |||| | |||||| | ||||||| || | | Sbjct 418849 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 418907 Query 202036 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 | || |||||| ||||||||||||||||||||| ||||||||| Sbjct 418908 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAACGAGATTGTAT 418953 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/170 (74%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 201076 TAAATTATCCTCAAAAACCACTTGTT---ACAACTGACATTGCAGAAT-TTAATGGTCTA 201131 || ||||||| ||||||||| | || |||| | || |||||| || | | || Sbjct 417588 TATATTATCCACAAAAACCATTAGTATGCACAAAAGCCA---CAGAATATTTACACTTTA 417644 Query 201132 AATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAAT 201191 || || | || ||| || |||||||||||||||||| ||||| || ||||||||| Sbjct 417645 AA-GATTTACCAGCTGGAATAAATGCAATTGTAGCAATTATGTGTTATACAGGATACAAT 417703 Query 201192 CAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 |||||||||||| | || | ||| || |||| ||||| | |||||||| Sbjct 417704 CAAGAAGATAGTTTAATCATGAATCAATCATCCATTGATCGGGGTTTATT 417753 >seq6 Length=831307 Score = 89.7 bits (98), Expect = 7e-13 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 201921 ATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 201980 |||||||| || |||| ||| ||||| | |||||||||||| | |||||||| ||| Sbjct 177825 ATTTTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 177766 Query 201981 GCGAGAAGTC-ATGGTCAAGTAACAACATTACATCGTCAACCAAACTG-TGGTCGGTCCC 202038 || ||| || | || | || | | |||| || ||||| ||||| ||||| || Sbjct 177765 GCTAGATCTCGAGGGCCTAGGCA-ATTATTAACACGACAACC-AACTGAAGGTCGATCAA 177708 Query 202039 AAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 202078 ||| || ||||||||| |||| |||||||||| |||||| Sbjct 177707 AAGAAGGAGGATTAAGACTTGGTGAAATGGAAAGAGATTG 177668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655274585749000