Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq7 132 6e-26 seq3 96.9 4e-15 seq13 82.4 1e-10 >seq7 Length=1057013 Score = 132 bits (146), Expect = 6e-26 Identities = 443/673 (66%), Gaps = 36/673 (5%) Strand=Plus/Plus Query 171542 AATTTGATTTAAGTAGTGGAACTATACCATTACTTACTACaaaaaaaaTTGTATATACTA 171601 ||||| |||||||| | | | | |||||| | || ||||||||| || | | || | Sbjct 915499 AATTTAATTTAAGT---GAATATTTTCCATTATTAACAACAAAAAAA-TTATTTGTAAGA 915554 Query 171602 A-TATCCTTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAA---ACAATTA 171657 |||| || |||| | |||||| |||| | || ||| || ||| || |||| Sbjct 915555 GGTATCATTGAAGAGTTGTTATGGTTTATAAGGGGAGAAACAAATGGAAATACACTATTA 915614 Query 171658 AATGATATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGC 171717 || | | ||| | | | ||| | | |||||| | | || ||||||||| || Sbjct 915615 ---GAAAAAAATGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATA-ATAG 915670 Query 171718 GGGTTTACTGAA-AGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACA 171776 | ||| | | ||| ||| ||| |||||||||||||| |||||||||||||| || Sbjct 915671 GAAATTATTTCATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCA 915730 Query 171777 TGCAGGGGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATT 171836 || ||| |||||| || || | ||||| | || |||| || || ||| | Sbjct 915731 CTTTGGTGCTGAATATACAGATATGCATGCTGATTATAAAGATAAAGGTGTTGATCAACT 915790 Query 171837 AAGTCAAACTATTAATACTTTAC---AAAACAACCCAGAAAGTAGAAGGATGTTAATTGA 171893 || ||| ||||| | |||| ||||| | || | ||||| | || || || | Sbjct 915791 AA---AAAATATTATAAATTTAATTAAAAACGATCCGACATGTAGACGAAT--TATTTTA 915845 Query 171894 TAGT---TGGAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGC 171950 | || ||||||||| | | ||| |||||| | || ||||| || | |||| Sbjct 915846 T-GTGCATGGAATGTAAAAGATTTAGATCAAATGGCATTACCCCCTTGTCATATTTTATG 915904 Query 171951 ACAATTTTATGTCA--GaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCT 172008 ||||||||||| || ||| ||| | ||| | ||||||||||| | Sbjct 915905 TCAATTTTATGTTTTTGATGGAAAATTATCATGTATTATG-----TATCAAAGATCTTGT 915959 Query 172009 GATTTAGGATTGGGGGTACCTTATAATATTGGATTTTATTC-ATTTTTA-ATACTTGTGT 172066 |||||||| | || || || | ||||||| | ||||| || |||| ||| | || Sbjct 915960 GATTTAGGTCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTACATA--TATGA 916017 Query 172067 TAAGTAAATGGTGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACG 172126 || || || |||||| |||| | ||||||||| || ||| ||| ||| | Sbjct 916018 TAGCACAAGTATGTAATTTACAACCAGCTGAATTTATTCATGTATTGGGAAATGCTCATG 916077 Query 172127 TGTATTCAAATCATGTTGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTC 172186 | ||| |||||||||||| ||||| ||||| ||||| |||| ||| ||| |||| | Sbjct 916078 TTTATAATAATCATGTTGAAAGCTTAAAAGTTCAGTTAAATAGAACACCCTATCCTTTCC 916137 Query 172187 CAAATGTTAAATT 172199 | | | ||||||| Sbjct 916138 CTAGTCTTAAATT 916150 >seq3 Length=540481 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193343 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 193402 |||||| |||||||| ||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 418789 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 418848 Query 193403 GCATGCTAGAAGTCATGGGCAAGTGACTACT-TTACATCGACAACCAAATTGTGGTCGTT 193461 ||||| |||||| || | | |||| ||||| ||||||||| || | | Sbjct 418849 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACAA-GACAACCAACAGAAGGAAGAT 418907 Query 193462 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 193521 | || ||| |||||||||||||||||||||||| ||| ||||| || ||||| Sbjct 418908 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAACGAGATTGTATGATATCTCATGGAT 418967 Query 193522 CTACTCAATTCTTAAATGAA 193541 || || || | ||||| ||| Sbjct 418968 CTGCTAAAATGTTAAAGGAA 418987 >seq13 Length=2809497 Score = 82.4 bits (90), Expect = 1e-10 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 50487 |||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1679530 CATATAATGCAGATTTTGATGGGGATGAAATGAATTTACATGTACCTCAA 1679481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628526006760960