Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 seq11 93.3 4e-14 >seq6 Length=831307 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||| | ||||||||||| | |||||||||||||| || |||||||| Sbjct 381609 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGAT 381550 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || |||||| | |||||| |||||| | || | ||||||||||| || || Sbjct 381549 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGG 381490 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || |||||| ||| | | ||| | || |||| ||||| || Sbjct 381489 ATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACA 381430 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | || || ||||| ||||||||||| || ||||||||| || Sbjct 381429 TCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCATACCT 381379 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||| | |||||||| || | || ||||||||||| |||||||| || Sbjct 381381 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 381322 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | |||||| || ||| | || | | ||| ||||| ||||| Sbjct 381321 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 381262 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || ||||| ||| | | ||| | || || | ||||| || Sbjct 381261 ATACCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCAACA 381202 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | || || ||||| || ||||||||||| || |||||| || Sbjct 381201 TCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCATACCT 381151 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||| | |||||||| || | |||||||||||||| || |||||||| Sbjct 381153 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATATTGTAATCAGAT 381094 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || || || | |||||| ||||| | || | | ||| ||||| || || Sbjct 381093 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGG 381034 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || |||||| ||| | | ||| | || |||| ||||| || Sbjct 381033 ATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACA 380974 Query 137365 TCAACAGT 137372 |||| ||| Sbjct 380973 TCAAGAGT 380966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 192/286 (67%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 151528 TTCAAAGTCATCACCATACGTATCG-TTGAGCTTAGGACACTCGTTAGGACACATTAATG 151586 |||||| || ||||| | || || || ||| | ||||| || ||||| |||||||| | Sbjct 423660 TTCAAATTCTTCACCCCAAGTTTCACTTAAGCCT-GGACATTCATTAGGGCACATTAAAG 423602 Query 151587 ACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCCGGAACCCATAATGCGTTCA 151646 ||| | ||||| | || | ||||||||||| ||| || ||||| | || | | Sbjct 423601 TCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAA 423542 Query 151647 TCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCA 151706 |||||||| ||| | ||||| | ||| ||| | | | ||||| || | Sbjct 423541 ATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAA 423482 Query 151707 TAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT---GCCAC 151763 ||| || ||||||| |||||||| || || || | ||||||| || |||| Sbjct 423481 AAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCAC 423422 Query 151764 CTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGG 151809 ||||||| || | | | ||| ||||||||||| | |||||| Sbjct 423421 CTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGG 423376 >seq11 Length=1635978 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||| | || || |||||||| ||||| || || | ||| || ||||| Sbjct 1474536 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1474595 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | |||||| ||||| | || | | ||| ||||| || || || |||||||| || Sbjct 1474596 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1474655 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 |||||| ||| | | ||| | || || | ||||| || |||| ||| | || || Sbjct 1474656 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1474715 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| ||||||||||| || |||||||| Sbjct 1474716 CCGGTTAATGTTTTTACAAAGATTTGCAT 1474744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488539963405200