Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq6 201 2e-46 seq11 178 3e-39 >seq6 Length=831307 Score = 201 bits (222), Expect = 2e-46 Identities = 182/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | ||||||||| | ||| |||||||| || || || || |||| Sbjct 381383 TACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAG 381324 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| ||||||| ||||||| ||||||||| ||||| |||| |||||||||||| |||| Sbjct 381323 ATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAG 381264 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| || || ||||| ||||||||||| ||||| ||||| | Sbjct 381263 GAATACCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCAA 381204 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || || || || || || ||||| || |||||||| Sbjct 381203 CATCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155 Score = 196 bits (216), Expect = 9e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || | | |||||| || | ||||||||||| || ||||| |||||||| Sbjct 381610 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGA 381551 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || ||||||||||||||| ||||||||||||||| |||| || ||| ||||| || || Sbjct 381550 TAATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGG 381491 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||||||||| || ||||| || |||||||| ||||| ||||| || Sbjct 381490 GATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 381431 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || || || || |||||||| || ||||| Sbjct 381430 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 179 bits (198), Expect = 7e-40 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | ||||||||| | ||||||||||| || ||||| ||||||| Sbjct 381155 TACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATATTGTAATCAG 381096 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| |||| || || |||| |||||||||||| || |||| |||||||||||| || | Sbjct 381095 ATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTG 381036 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || ||||| || |||||||| ||||| ||||| | Sbjct 381035 GGATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAA 380976 Query 82762 CTTCCAAAGTTATCGTCTTGCCTG 82785 | || | ||| || || || |||| Sbjct 380975 CATCAAGAGTAATTGTTTTTCCTG 380952 >seq11 Length=1635978 Score = 178 bits (196), Expect = 3e-39 Identities = 158/198 (80%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || ||||| || || ||||| ||||||| |||| || ||||||| |||||||||| Sbjct 1474548 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1474607 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 || || |||| |||||||||||| || || |||||||| |||||||| || |||||||| Sbjct 1474608 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1474667 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||||||||| |||||| ||||| || || | ||| || || || || || || || Sbjct 1474668 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1474727 Query 82794 TTTACAAATATCTGCATT 82811 |||||||| || |||||| Sbjct 1474728 TTTACAAAGATTTGCATT 1474745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981818884844079