Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 4e-11 >seq6 Length=831307 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/136 (73%), Gaps = 11/136 (8%) Strand=Plus/Minus Query 81647 GTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA---------- 81696 ||| |||| || || ||||| |||||||||| ||||||| ||||||||| Sbjct 381579 GTAGATTCTTTTTGAATATTGTAATCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCA 381520 Query 81697 -CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTT 81755 |||| |||| || ||| ||| | || | || |||| ||||||||||| || ||||| Sbjct 381519 GCAAAAATTAATCGTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTA 381460 Query 81756 ATATTTTCAATCGTAT 81771 | |||||||| |||| Sbjct 381459 ACGTTTTCAATAGTAT 381444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903403735564960