Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6 307 3e-78 seq7 120 7e-22 seq13 100 7e-16 seq8 95.1 3e-14 seq10 86.0 1e-11 >seq6 Length=831307 Score = 307 bits (340), Expect = 3e-78 Identities = 649/957 (68%), Gaps = 21/957 (2%) Strand=Plus/Plus Query 110215 TTGTTACAAAGGAAGTATTTAATGTCGTAAAGAAACATAAAACAAAACTAAATAATATTA 110274 || ||| || ||||||| | || | | | | |||||||| ||||||| | Sbjct 422900 TTATTAGTAAAGAAGTATATGATTTTATTATGGAACATAAAGATCGTTTAAATAAAGAAA 422959 Query 110275 TCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTT 110334 | |||||||| | || | | || ||| |||||||| || ||||| | ||| | ||| Sbjct 422960 TAGATTATACAAGAGATTTTAATTATGATTATTTTGGATTTAAAACATTAGAAAGGTCTT 423019 Query 110335 ATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTG 110394 | ||| | ||| | ||| | || ||||||||||||||||| | || | | || Sbjct 423020 ACTTATTACGTATTAATAATAAAATTATTGAACGTCCTCAACATTTATTAATGAGAGTAT 423079 Query 110395 CGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTA 110454 | || || || ||| | ||||| || || | | | ||| ||| || || | || Sbjct 423080 CTATAGGAATACATATAGATGATCTTGAAAAGGCTTTAGAAACATATCATTTAAT--GTC 423137 Query 110455 AAAAGAAAGCTAT--TCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACA 110512 | || || || | ||||||||||||||| ||||||| | ||||| || || Sbjct 423138 ACAAAAATACTTTACTCATGCTACTCCTACATTATTTAATTCGGGAACACCAAGACCCCA 423197 Query 110513 ATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGC 110572 | || |||| |||||| | || ||| || |||||| || |||||||| | ||| | Sbjct 423198 AATGTCTTCATGCTTTTTATTATCAATGAAATCTGATTCAATAGAAGGTATATTTGAAAC 423257 Query 110573 TCTTAAAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATG 110631 |||||| || ||| | ||| ||||| | ||||| || ||| | || || | Sbjct 423258 A-TTAAAGCAATGTGCATTGATTAGTAAAACAGCAGGAGGTATAGGTGTGGCTGTACAAG 423316 Query 110632 ATATTCGC--TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGT 110689 ||||| | |||||| | | ||| | | | || ||| |||| ||| | || Sbjct 423317 ATATTAGAGGTCAAAATT--CTTACATCAGAGGAACTAATGGTATATCAAATGGTTTAGT 423374 Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAG 110746 ||||||||||||||| || || || || |||| |||||| |||||||||| || || Sbjct 423375 TCCAATGTTAAGAGTTTTTAATGATACAGCAAGATATGTAGATCAAGGTGGAGGAAAAAG 423434 Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 ||| || || |||||| | ||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 423435 AAAAGGTTCTTTTGCTGTATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTAGA 423494 Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866 | | |||||||| || |||||| ||||| ||||||||||||||||| || || Sbjct 423495 TTTAAGAAAAAATCATGGTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTG 423554 Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 | | | |||||||| |||||| | || | |||||| | ||| || | ||||| || Sbjct 423555 GGTACCTGATTTATTTATGAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGTGCCC 423614 Query 110927 TCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAA 110986 | || | ||| || || ||| | || |||| |||||| | | || ||| Sbjct 423615 TAATGAATGTCCAGGCTTAAGTGAAACTTGGGGTGAAGAATTTGAAAAATTATATACAAA 423674 Query 110987 ATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAAGAACTTTGGTTCAA 111043 ||| ||| ||||| || || ||||| ||| ||| || ||||| | ||||| Sbjct 423675 ATACGAAGAAGAA---AATTTAGGCAAAAAAACAGTTCTTGCACAAGATTTATGGTTTGC 423731 Query 111044 AATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATTA 111102 || | || ||| | |||||||| || ||||| || ||||||||| ||| || Sbjct 423732 TATATTACAAAGCCAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCAT-GTA 423790 Query 111103 ATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 || ||||| || |||| ||||||||||||||||| | ||||||||| || |||| Sbjct 423791 ATTCTAAATCGAACCAAAAAAATTTAGGAACAATTAAATGTAGTAATTTATGTTGTG 423847 Score = 123 bits (136), Expect = 6e-23 Identities = 478/746 (64%), Gaps = 69/746 (9%) Strand=Plus/Plus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| ||||||| | || || ||||||||||||| | || |||||| || || Sbjct 423967 ACTAAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTATCCAGTTAAA 424026 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||| || || ||||| | ||||||||| ||||| || || |||||||||||||| Sbjct 424027 GAAGCTGAAAGATCAAATAAAAGGCATAGACCTATTGGAATAGGAGTACAAGGATTAGCA 424086 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 ||| ||||||| | | || ||| | ||| ||||| |||||| |||||| | Sbjct 424087 GATACATTTATGCTTTTAAGATATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGA 424146 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCTATGACTGAATCTAATGAACTTGCTATTaaa 112820 | || || ||||| || |||| |||||| | ||| | || || || Sbjct 424147 AGAATATTTGAAACTATGTATTATGCTGCTTT------------AGAAATGTCTGTTGAA 424194 Query 112821 aaagcagaaaaatcaaagaaaaCTGATTTGAA--ATTTCCAGGAGCTTATGATAGTTTCG 112878 ||| || ||| || || |||| || || ||| |||| | Sbjct 424195 TTGGCACAA----GTAAGTGGAC-CATATGAATCATATCAAGG---------TAGTCCAG 424240 Query 112879 AAGGCTCACCTTTTTCACAGGGAAAATTCCAATTTGACCTTTGGGAT-CAACAGCCTCTT 112937 | || || |||| ||| |||||||| | ||| || ||| || | Sbjct 424241 CAAGC------------CAAGGAATATTACAATTTGATATGTGGAATGCAAAAG----TA 424284 Query 112938 GACAATGAACCAAAATAT---GATTGGAAAAATCTTAAAGATAGTGTTATG-AAACATGG 112993 || ||| |||||| |||||| | | ||||| | | || | |||||||| Sbjct 424285 GATAAT------AAATATTGGGATTGG-GATTTATTAAAAAAAAAAATAAGTAAACATGG 424337 Query 112994 AACTACAAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGG 113053 | | ||| ||||| || || ||||| ||||| |||||||| ||| |||| ||| | || Sbjct 424338 ATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAATTTTAGG 424397 Query 113054 TAATAATGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGG 113113 |||||||||| || || ||| ||||||||| |||||| | |||||||| || || Sbjct 424398 AAATAATGAATCCTTTGAACCATATACAAGTAACATTTATTACAGACGTGTTTTAAGTGG 424457 Query 113114 TGAGTTTGTACTTTGTAATAAAT----ATCTGCAAGAAGAACTTCTCGGAATCGGTAAAT 113169 ||| || |||||| | ||| || || | |||| ||| | | | ||| | Sbjct 424458 TGAATT----CTTTGTCGTTAATCCTCATTTGTTAAAAGATCTTTTTGATAGAGGTCTTT 424513 Query 113170 GGAACAATGAAGTGAAAAACTCCATT-ATTGCTAATCAAGGTTCGGTTCAACATCTAA-- 113226 || | | || ||||| | | ||| ||||| || | || |||||| || | | Sbjct 424514 GGGATGAAGATATGAAACA-ACAATTAATTGCCCATAATGGAAGTGTTCAATATATTAGC 424572 Query 113227 -AATTGCCTGATTGCGTGAAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTC 113285 || | ||| | | ||||||| | | ||| || |||||||||| || ||| Sbjct 424573 GAAATACCTAGTGACTTGAAAGAGTTGTATAAAACCGTTTGGGAAATCAAACAAAAAAAT 424632 Query 113286 GTAATTGATATGGCTGCAGATCGTGG 113311 | |||||||||||||| |||||||| Sbjct 424633 ATTATTGATATGGCTGCTGATCGTGG 424658 >seq7 Length=1057013 Score = 120 bits (132), Expect = 7e-22 Identities = 276/406 (68%), Gaps = 21/406 (5%) Strand=Plus/Minus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 ||||||||||||||||||||||||||||| || | |||||||| ||| | ||| ||||| Sbjct 915916 ACATAAAATTGACATAAAATATGACAAGGGGGTAATGCCATTTGATCTAAATCTTTTACA 915857 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCTTCACAA 59056 |||||||||| |||||||| || | | | || || |||||||| | | | | | Sbjct 915856 TTCCATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATA 915797 Query 59057 TGTTTTATTTGGTCAAATCCATTA---GTATATTCAGTATTGGCATCAATGTATTTATCT 59113 | ||||| ||| |||| || ||| |||| |||| || ||| | |||| | | Sbjct 915796 TTTTTTAGTTGATCAACACCTTTATCTTTATAATCAGCATGCATATCTGTATATTCAGCA 915737 Query 59114 CCCCAATAACGCCATTGAAAACCATATACAGGTCC-AAG--AGTTCCTTCAGGAT--ATT 59168 || | | | ||||||||| || || | || || ||| | | |||| || | | Sbjct 915736 CCAAAGTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTAACTTCTCTATGAAAT 915677 Query 59169 CATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACCATCCCAAATATGAACAT 59228 |||| | | || | ||| |||||||| |||| | ||||| || |||| Sbjct 915676 AATTT-----CCTATTATCTAAAAACTCTCTTGTCCCATTAGCTTCCCATATTCTTACAT 915622 Query 59229 TATTATCATTAAGAGATTTATT---ATCTGTTTTTCCAGATAGAAACCATAACAATTCCT 59285 | || || ||| || | |||| || ||||| ||| || |||||||||||| || | Sbjct 915621 TTTTTTC--TAATAG-TGTATTTCCATTTGTTTCTCCCCTTATAAACCATAACAACTCTT 915565 Query 59286 TAATG-CAAATTTTCCAAGCAACtttttttGTTGTAAGCATTGGAA 59330 |||| | | || ||| || |||||||||||| | | ||||| Sbjct 915564 CAATGATACCTCTTACAAATAA-TTTTTTTGTTGTTAATAATGGAA 915520 >seq13 Length=2809497 Score = 100 bits (110), Expect = 7e-16 Identities = 115/154 (75%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| |||||||| | ||| ||||| || ||| |||||||| ||| Sbjct 1679630 TTTAATAGACAACCATCTTTACATCGTATGTCAATTATGTGTCATAAAGCTCGAGT---- 1679575 Query 305396 TCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 | |||||| |||||||| || |||| | ||| |||| || |||||||| ||||| Sbjct 1679574 TATGGATTATAAAACATTTCGCTTTAATGAATGTGTATGTAGTCCATATAATGCAGATTT 1679515 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||| |||||||||||| | |||||||||||| Sbjct 1679514 TGATGGGGATGAAATGAATTTACATGTACCTCAA 1679481 >seq8 Length=1335007 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 306249 ATAGAACATTACCATTATTTAGTAAATTTGATAATGGTTTAGATGCTCGTGGATTCATAT 306308 ||||| |||||||| |||| ||||||||| |||| ||| | | || || | | Sbjct 337120 ATAGATCATTACCACATTTTATTAAATTTGACTATGGACCAGAAAGTAGAGGGTTTGTGT 337061 Query 306309 CAAGTTC--ATTTAAACAAGGACTATCTCCTTCTGAATACTTCTTTCATGCAATTAGCGG 306366 ||| ||| |||||| ||| || | || ||| ||| |||||||| || | || Sbjct 337060 CAAATTCTTATTTAAGT--GGATTAACGCCACAAGAAGTCTTTTTTCATGCTATGGGAGG 337003 Query 306367 ACGTGACGGTGTTATTGATACTGCTTGTAAGACAGCAAGTATTGGTTATCTCCAAAGAAA 306426 | || ||| ||||||||||||||||||| ||| || | ||||||| | ||||||| Sbjct 337002 TAGAGAAGGTATTATTGATACTGCTTGTAAAACATCAGAAACTGGTTATATACAAAGAAG 336943 Query 306427 ATTAATGAAAACGCTTGAAGATATT 306451 |||||| ||| | | |||||| || Sbjct 336942 ATTAATTAAAGCTATGGAAGATGTT 336918 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/186 (71%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| ||| | |||| | | || ||| | || |||||| | ||||||||| Sbjct 338411 AGACATATGACTGATGAAGATTACATATTATTTAATCGACAGCCATCATTACATAAAATG 338352 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| || |||| ||| |||| || | || ||||| |||||| || Sbjct 338351 AGTATTATGGGGCACAAAGCAAAAATATTGCCTTATTCTACCTTTCGTTTAAATTTA--- 338295 Query 305426 GCTTGTA----CGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 ||| ||| | || |||||||| |||||||| || ||||||||||| | ||| || | Sbjct 338294 GCT-GTAACATCACCATATAATGCCGATTTTGACGGTGATGAAATGAACTTACATTTAGC 338236 Query 305482 TCAATC 305487 |||||| Sbjct 338235 TCAATC 338230 >seq10 Length=1513010 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/134 (75%), Gaps = 6/134 (4%) Strand=Plus/Plus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAA 167298 |||| | | | || |||||||| ||||| |||||| || || ||||||| ||||| Sbjct 1069243 TCATCATAGCCCCTGCATTATCAAATTCGCCACAATAATTGGGGGCAGAAAATAAAGTAA 1069302 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGC---ACGTA 167355 |||||| | || ||| ||||||||||||||||| ||||||| ||| || || || Sbjct 1069303 CTAATTGTCTTTTTGCAAAAAATTCATAACCATCTTCTACAACTTGATGTGCTCTACATA 1069362 Query 167356 TTA---CAAGTTCA 167366 ||| |||||||| Sbjct 1069363 TTAAATCAAGTTCA 1069376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186802748808221