Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6 138 7e-28 seq11 114 8e-21 >seq6 Length=831307 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || | ||| || || |||| ||| |||||||| |||||||| || || Sbjct 381382 ACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGA 381323 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | || || |||||||||||||||||||| || | || ||||| | || Sbjct 381322 TAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGG 381263 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| | || ||||| || | ||| ||| || ||| | Sbjct 381262 AATACCTTCTTTATCTTGGATTTT-AGCTTTAACATTTTCAATGGTATCGGATGGTTCAA 381204 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| ||||| || ||||| |||||||| || ||||||||| Sbjct 381203 CATCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCATA 381154 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || | ||| || ||||||| || |||||||| || |||||||| || Sbjct 381610 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGA 381551 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | |||| || ||||||||||| |||||||| || || |||||||| | || Sbjct 381550 TAATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGG 381491 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| | || ||| | || | || || || ||| | Sbjct 381490 GATACCTTCTTTATCTTGAATTTT-AGCTTTAACGTTTTCAATAGTATCTGATGGTTCAA 381432 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || ||||| || ||||| |||||||||||||| |||||| Sbjct 381431 CATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCATA 381382 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || | ||| || || |||| || |||||||| || |||||||| || Sbjct 381154 ACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATATTGTAATCAGA 381095 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | | || || ||||||||||| || ||||| || | || ||||| | || Sbjct 381094 TAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGG 381035 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| | || ||| | || | || || || ||| | Sbjct 381034 GATACCTTCTTTATCTTGAATTTT-AGCTTTAACGTTTTCAATAGTATCTGATGGTTCAA 380976 Query 33701 CGTCAACCGTGATCGTTTTACCTG 33724 | |||| || || ||||| |||| Sbjct 380975 CATCAAGAGTAATTGTTTTTCCTG 380952 >seq11 Length=1635978 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||||| || ||||||||| ||||| || || || | ||| | | | || || Sbjct 1474536 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1474595 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||||||||| || ||||| || | || ||||| | || | |||||||| || Sbjct 1474596 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1474655 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| || || ||||| || | || || || ||| || |||| ||||| ||||| Sbjct 1474656 ATTTT-TGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1474714 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| |||||||||||||| ||||| Sbjct 1474715 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1474744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701351981120