Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq11 87.8 2e-12 >seq6 Length=831307 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| || |||| | || |||||||||||||||||||| | || | |||| Sbjct 381366 AAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCT 381307 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||||| |||| | | |||| | |||||||| ||||| || ||||||||||| Sbjct 381306 TCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCT 381247 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||||| ||| | | ||| | ||||||| || || || || | || | ||| Sbjct 381246 TGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCAACATCAAGAGTGATTGTT 381187 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || | |||||||| |||||||||||| Sbjct 381186 TTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGT--ACGCGAA 131968 ||||| ||||||| | | || ||||||||||| ||||| || | | ||| | || || Sbjct 381594 AAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGATAATGTTCTAC-CG-- 381538 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| || | | | |||| || || ||||| || || || ||||||||| Sbjct 381537 TCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGGATACCTTCTTTA 381478 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | |||||| | || || || || | || | Sbjct 381477 TCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATT 381418 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || | ||||||| || || ||||| Sbjct 381417 GTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 >seq11 Length=1635978 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||||| | ||||||||||||||||||| ||||| | | || || | |||||| Sbjct 1474536 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAAT-GTTCTTCCATCTTC 1474594 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||| || | | |||| | |||||||| || || || ||||||||||| Sbjct 1474595 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1474654 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | ||||| | || || || || | || | ||||| Sbjct 1474655 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1474714 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || | ||||||| || || ||||| Sbjct 1474715 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1474744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607261999960