Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq6 122 7e-23 seq11 96.9 3e-15 >seq6 Length=831307 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| |||||||| || || || || ||||| | || ||||| Sbjct 381383 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 381442 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 381443 GATACTATTGAAAACGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 381502 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| || |||||||||||||| || ||| | |||||||| Sbjct 381503 CAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGATTACAAT 381562 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||||||| |||||||||| || || ||| ||||||| Sbjct 381563 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 381609 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || ||||| || || || || || || || | || ||||| | Sbjct 381155 ATGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 381214 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||| || |||||||| | || ||||||| Sbjct 381215 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCTGATCAA 381274 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || ||||||||||||||| || ||| | || |||||| Sbjct 381275 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 381334 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| || |||| ||||| || || ||| ||||||| Sbjct 381335 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 381381 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 106344 AAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAA 106403 |||||| || |||||||| | || |||||||||||| | |||| || || ||| Sbjct 381011 AAAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTCGCTGGAAAA 381070 Query 106404 CAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACAT 106463 |||||||| ||| | ||| | |||||||| || |||||||||||||| |||| Sbjct 381071 CAATTAGAGGATGGAAGAACACTATCTGATTACAATATTCAAAAAGAATCTACCTTACAC 381130 Query 106464 TTAGTATTGAGGTTACGAGGAGG 106486 ||||| || || ||| ||||||| Sbjct 381131 TTAGTTTTAAGATTAAGAGGAGG 381153 >seq11 Length=1635978 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 106252 GTTTA--AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC 106309 ||||| ||||||||||| ||||| |||||||| || || || || || || | || Sbjct 1474754 GTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGT 1474695 Query 106310 AGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCC 106369 ||||| ||| | ||| | || ||| |||||| || |||||||| | || Sbjct 1474694 TGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCC 1474635 Query 106370 CGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGG 106429 | |||||||||||| | |||| || || ||||||||||||||| | ||| | Sbjct 1474634 CCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATC 1474575 Query 106430 CGATTACAACATACAAAAAGAATCTACACTACATTTAGTA 106469 || || ||||| |||||||| || || ||||||| ||| Sbjct 1474574 TGACTATAACATTCAAAAAGAGTCAACCTTACATTTGGTA 1474535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402326358857888