Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 470 2e-127 seq10 242 5e-59 >seq6 Length=831307 Score = 470 bits (520), Expect = 2e-127 Identities = 1155/1723 (67%), Gaps = 50/1723 (3%) Strand=Plus/Minus Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 || || |||||| || | ||| || ||||| | |||||| | ||||| |||||| Sbjct 424673 TGGTCAATGAAAATACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCC 424614 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG---GCTCGTATTTTGAATGGAT 68631 |||| || ||| | | || ||| | ||| || | ||| ||| ||||| | Sbjct 424613 CAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTTCGCTAATATATTGAACACTT 424554 Query 68632 CCACCATCGGATAT-AATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 ||| || || || |||| | | || || || |||| ||| | ||| || | Sbjct 424553 CCATTATGGGCAATTAATTGTTGT-TTCATATCTTCATCCCAAAGACCTCTATCAAAAAG 424495 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | || | | | ||| |||||||| | ||||| ||| ||| || ||| |||| Sbjct 424494 ATCTTTTAACAAATGAGGATTAACGACAAAGAATTCACCACTTAAAAC---ACGTCTGTA 424438 Query 68751 A---ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 | || ||||| ||||||||||| | |||||||||||||| | |||||| | |||||| Sbjct 424437 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGA 424378 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 || |||||||||||||| | | | | |||||| | |||||| | | ||||| | Sbjct 424377 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTT 424318 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAA---CATTCCAAAGATCGTATTG 68924 ||||| | |||||||||| | | ||| ||||||| | ||| |||| Sbjct 424317 TTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTG 424258 Query 68925 TAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCC--TTCCTGTTCA 68982 || ||||| | ||||| || | ||||| |||||| ||||| || || | Sbjct 424257 TAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGT-- 424200 Query 68983 GCTAGTTCA-CA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTA 69039 || | |||| || || | ||||| ||| | ||||| || ||||| || || ||||| | Sbjct 424199 GCCAATTCAACAGACATT--TCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-A 424143 Query 69040 TTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCC 69099 || | |||| |||||| | || ||||||| |||||| ||||||| |||||| Sbjct 424142 TTTAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCT 424083 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 ||||| || || || || || ||||||||||| || |||||||| |||||||||||| | Sbjct 424082 AATCCTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGCTTCTTTA 424023 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG 69219 | ||||||||||| | || |||||||||| | ||||| | || || ||| | | Sbjct 424022 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAAT 423964 Query 69220 -TCCTTTAGTTTGAGAAAATCAAATCGTCCAT-----CTAT-AACAAACATATTCAGTGC 69272 || | || ||| ||||| |||| | | |||| |||||| | | ||| Sbjct 423963 ATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGC 423904 Query 69273 TACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGT 69332 | || |||| ||||||||| ||||| |||| || || ||||| || || || Sbjct 423903 AATGGACGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACA 423844 Query 69333 ACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGC 69392 ||||| |||||||||||| || || || | ||||| || || || ||||| || Sbjct 423843 ACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATTACATGC 423784 Query 69393 GTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 || || || | ||| | || ||||||||| || || | || | ||||| | || Sbjct 423783 ATCTTTATATAACATATATGGTACACCAGTTTCTATTTG-GCTTTG-TAATATAG---CA 423729 Query 69453 AACGACCCTAGCATTT---ATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGT 69506 ||| | | | | | | || || || | | || |||| ||| |||| ||| Sbjct 423728 AACCATAA-ATCTTGTGCAAGAACTGTTTTTTTGCCTAAATTTTCTTCTTCGTATTTTGT 423670 Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||| ||| ||||| || |||||| ||| || || ||||||||||| || || Sbjct 423669 ATATAATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCA 423610 Query 69567 CATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAG 69626 ||| || | ||| | || ||||| |||| ||||||||||| ||| || | ||||| Sbjct 423609 CATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAAT 423550 Query 69627 AGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAG 69686 ||| ||| | ||| | | ||| |||||| || || ||||||| | | ||| | Sbjct 423549 AGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAA 423490 Query 69687 AAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTT 69746 ||| || | |||||| |||||||||||||| | ||||| || | || || ||| Sbjct 423489 AAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTT 423430 Query 69747 ATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAAT 69806 ||| || ||||||| ||||| || || | |||| | ||||| | ||| |||| | Sbjct 423429 TCCTCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAA 423370 Query 69807 ACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG--CGCGAATATTACTA 69864 |||||| ||| ||||||| ||||| || ||| | ||| | | ||||| Sbjct 423369 ACCATTTGATATACCATTAGTTCCTCTGATGTAA--GAATTTTGACCTCTAATATCTTGT 423312 Query 69865 ATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCA 69924 | || | |||||| |||||||| ||||| || | ||||| | || ||||| ||| Sbjct 423311 ACAGCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCA 423252 Query 69925 TATATACCCTCTATGCTATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 ||||||| ||||| |||| | ||| || ||| || ||| || ||||||||| | Sbjct 423251 AATATACCTTCTATTGAATCAGATTTCATTGATAATAA-AAAGCATGAAGACATTTGGGG 423193 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAG 70043 | ||||||| ||||||||||||||||| || ||||| || |||||| || | Sbjct 423192 TCTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAGTATTTTTGTGACAT 423133 Query 70044 CAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACG 70103 | || |||||||| | ||| ||| | ||| ||| |||||||| | || | Sbjct 423132 TAAATGATATGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCT 423073 Query 70104 CATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTT 70163 ||| || | ||| ||||| ||||| | |||||||||| || || | ||| || | Sbjct 423072 CATTAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCT 423013 Query 70164 TTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTT 70206 ||| | |||||||| |||||||| | || ||| |||||| Sbjct 423012 TTCTAATGTTTTAAATCCAAAATAATCATAATTAAAATCTCTT 422970 >seq10 Length=1513010 Score = 242 bits (268), Expect = 5e-59 Identities = 615/921 (67%), Gaps = 27/921 (3%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAA--TGATTATCTTCTT-GTGACATAACTCCCATTTT 39327 |||||| ||| | ||||||||| | || | ||||| | | |||||| || ||| Sbjct 1394813 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTT 1394754 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 ||| || || |||| | || || || ||||| ||||| |||| || ||||| || Sbjct 1394753 TTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTC 1394694 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAA---TTCTGAAAT 39444 ||| || ||| ||||| ||| || | ||| | | ||||| |||| ||| Sbjct 1394693 CATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCT--AAT 1394636 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 |||| ||| ||||||||||| |||||| ||| | | |||||||||| || | Sbjct 1394635 -AATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAATTAA 1394577 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | | |||| || || | ||| | |||| | || || || ||| | | ||| Sbjct 1394576 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1394517 Query 39565 CGATGTT--ACTACCTCATCACTCGGTGGATG--CAATAAATGTTTAAACATTAAGCAGG 39620 || || || ||||| || | || | | || | |||| ||||||| Sbjct 1394516 --ATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAGCAAGCTATAAA--TTAAGCAAT 1394461 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 || || |||| || |||||||||||||| ||||| ||| |||||| | ||| Sbjct 1394460 TAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCAT 1394401 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGC 39740 | | | | | ||||| | ||||||||| ||| |||| |||| ||| || || | Sbjct 1394400 GTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTC 1394341 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAAC---TTGTATCATTATGTATCC 39797 |||| || |||| || |||| ||| || | || | |||||||| ||||| Sbjct 1394340 CTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TATCC 1394284 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | || |||||| ||||| || |||| || || |||| ||||||| ||| | Sbjct 1394283 ATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATA 1394224 Query 39858 GAT--AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 || ||| | | | || | ||| ||| ||| |||| ||||| | |||||| |||| Sbjct 1394223 AATTTAATCTCTCTT-TCTC-ATCCCTAATATAATTATCAATTAATAAACTATAGGTTTC 1394166 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 || || || ||||||| || || ||||| | ||||| | | |||||| | ||||| Sbjct 1394165 AGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTG 1394106 Query 39976 TACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 ||| ||| ||||| | || |||||||| ||||||||||||||||| ||||| Sbjct 1394105 TACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAA 1394046 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATT 40095 |||||| | |||||||| ||||||| ||||||| | ||||| | |||| || Sbjct 1394045 AAATGCTAGCACATGTTTTATAAAATGCTTTTCATTTACATTTAATTTTTCAAAGTCTTT 1393986 Query 40096 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | ||| |||||| ||||| ||||||||| |||||||| || ||||| || ||||| || Sbjct 1393985 CAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATA 1393926 Query 40156 CATGTTCCATATATCACGATA 40176 | ||||||| ||| |||| Sbjct 1393925 AAAATTCCATACTTCAGGATA 1393905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903124416040