Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4 179 3e-40 seq10 170 2e-37 seq7 154 1e-32 >seq4 Length=705592 Score = 179 bits (198), Expect = 3e-40 Identities = 381/569 (67%), Gaps = 15/569 (3%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTT 19416 ||||| || || ||| |||||||||||||| || ||| || | | ||| ||| | Sbjct 41638 TATGGTCCTCCTGGTACCGGAAAAACATTAATAGCTAGACAAATAGGCAAAACATTAAAT 41579 Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | | | |||| |||||| | ||||| |||||||| |||||||| || ||||||||| Sbjct 41578 GCTAGAGAACCG---AAAATTATCAATGGGCCTGAAATATTAAATAAGTACGTAGGTCAA 41522 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536 || ||||||||| | || ||| ||| || |||||| || | || | | || Sbjct 41521 TCTGAAGAAAATATTCGTAATTTATTTAAAGAGGCTGAATTGGAGTATAAGCAATCTGGA 41462 Query 19537 CGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA 19596 || | || || ||||| ||| ||||||| | || ||||| ||| |||||| Sbjct 41461 GAGAATTCATTATTACATATTATTATATTAGATGAGATAGATGCAATTTGTCGACAAAGA 41402 Query 19597 GGT---------TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCA 19647 ||| ||| ||| || ||| |||| | | | || |||||| | | ||| Sbjct 41401 GGTAGTGCTGCATCTAGTGGGTCAGGTGTAAATGATAGTATAGTTAATCAATTATTATCA 41342 Query 19648 AAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTG 19707 ||| |||| || || || | |||||||| || | ||||| ||||| |||||| | Sbjct 41341 AAAATAGATGGAGTAAATAGCTTAAATAATATACTATTAATTGGTATGACAAATAGAATA 41282 Query 19708 GAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAAC 19767 || ||||| || || || ||| |||| || || || ||| || | || ||||| Sbjct 41281 GATTTAATCGATGAAGCATTGTTAAGACCAGGCCGATTTGAATTACATATTGAAATATCA 41222 Query 19768 TTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAA 19827 |||||| || || || || | |||| ||||| || |||||| || ||| |||| Sbjct 41221 TTACCCAATAAAGAAGGTCGAATTCAAATATTAAATATTCATACAAAAAATATGAGACAG 41162 Query 19828 AATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTAT 19887 ||||| |||||| | ||||| || |||||||| | |||| ||| || | | Sbjct 41161 AATAATAAATTAAATAAAGATGTTAATATAGAAGAATTAGCAGAAAGAACCCCCAATTTT 41102 Query 19888 AGCGGCGCAGAACTTGAGGGATTAGTGAG 19916 || |||||| |||| |||||||| || Sbjct 41101 TCAGGTGCAGAAATTGAAGGATTAGTAAG 41073 >seq10 Length=1513010 Score = 170 bits (188), Expect = 2e-37 Identities = 380/566 (67%), Gaps = 6/566 (1%) Strand=Plus/Plus Query 43721 TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAA 43780 |||| ||| ||||| | | || |||||||| |||| ||||||||||| || |||||| Sbjct 1393905 TATCCTGAAGTATGGAATTTTTATAAAAAAGCTGAGGCCTCATTTTGGACTGCTGAAGAA 1393964 Query 43781 GTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATT 43838 | ||||| | | || || | || ||| | |||||| | | ||||| |||| Sbjct 1393965 ATAGATTTATCAAGTGATTTGAAAGACTTTGAAAA--ATTAAATGTAAATGAAAAGCATT 1394022 Query 43839 TTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGG 43898 ||||| || | || |||||||| || || || || ||||| |||||||| | Sbjct 1394023 TTATAAAACATGTGCTAGCATTTTTTGCAGCTAGTGATGGAATAGTATTAGAAAATTTAG 1394082 Query 43899 TTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAA 43958 |||| ||| |||||| ||| || ||||| | ||||||| ||||||| Sbjct 1394083 CTAGTAAATTTTTAAGAGAAGTACAAATAATTGAAGCCAAAAAGTTTTATGCTTTTCAAA 1394142 Query 43959 TTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAG 44018 | || | |||||||| || || |||| || ||| | | || |||| || || | | Sbjct 1394143 TAGCTGTTGAAAATATACACTCTGAAACCTATAGTTTATTAATTGATAATTATATTAGGG 1394202 Query 44019 ATGGGCACGAGAAGCATCGATTG-TTTAATGCGATAGAAACAGTACCTGCGATTAAACAT 44077 ||| | | |||| | | ||| ||| |||| || |||| |||| || || ||| || Sbjct 1394203 ATGAGAAAGAGA-GATTAAATTTATTTCATGCTATTGAAAATATACCAGCAATAAAAAAT 1394261 Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTC 44137 |||||| ||||| ||||||||||||| | | ||||||| ||| || |||| Sbjct 1394262 AAAGCATTATGGGCAGCTAAATGGATAAATGATACGAACTCTTTTGCTGAAAGAATTGTA 1394321 Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTA 44197 || |||| ||| ||||| || || ||| ||| ||| || ||||||||||| Sbjct 1394322 GCTAATGCATGTGTCGAAGGAATATTATTTAGTGGAAGTTTTTGTGCAATATTTTGGTTT 1394381 Query 44198 AAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAA 44257 || |||| | | | | ||| || || ||| ||||| || || ||| | |||||| Sbjct 1394382 AAAAAACAAAATAAATTACATGGTTTAACATTTAGTAATGAATTGATTAGTAGAGATGAA 1394441 Query 44258 GGCTTACATTGCGATTTTGCTTGCTT 44283 || ||||| |||||| |||||| Sbjct 1394442 GGATTACACACAGATTTTAATTGCTT 1394467 >seq7 Length=1057013 Score = 154 bits (170), Expect = 1e-32 Identities = 272/391 (70%), Gaps = 4/391 (1%) Strand=Plus/Plus Query 40875 GGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC-TATGTACTC 40933 ||||| |||| |||||||| | | | || ||||| || ||||| ||| |||| | | Sbjct 915702 GGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATAT-ACAGATATGCATGC 915760 Query 40934 TGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGA 40993 |||||||| ||||||| | |||||| || | ||||| || |||||| ||| Sbjct 915761 TGATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATTTAATTAAAAACGA 915820 Query 40994 TCCCGATA-GCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 ||| || | | |||| || || || || || ||||| || || || || |||| Sbjct 915821 TCC-GACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATTTAGATCAAATGG 915879 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 |||| || ||||||||| | |||||||| ||||| |||| |||| || | |||||| Sbjct 915880 CATTACCCCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTATCATGTA 915939 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATG 41172 ||||||||||||| |||| | || || || || || || || || || ||| Sbjct 915940 TTATGTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAATATTGCTTCCTATT 915999 Query 41173 CTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACA 41232 || | | || |||||||| ||||| || |||||| |||| | ||||||| |||| Sbjct 916000 CTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTGAATTTATTCATG 916059 Query 41233 CGTTAGGAGATGGACATATTTACATTAATCA 41263 || ||| ||| ||| |||| | |||||| Sbjct 916060 TATTGGGAAATGCTCATGTTTATAATAATCA 916090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452798119305