Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq11 104 2e-17 >seq6 Length=831307 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || |||||||| ||||| ||||||||||||||||| || | | ||||| | |||| Sbjct 381594 AAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGATAATGTTCTAC-CGTC 381536 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || |||| | || || ||||| || || | ||| |||||||| Sbjct 381535 TTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGGATACCTTCTTTATC 381476 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | | |||| | ||| |||| | |||||| || ||||| || | Sbjct 381475 TTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGT 381416 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | ||||| ||||||||||||||| || || Sbjct 381415 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATACCTCCT 381376 Score = 114 bits (126), Expect = 1e-20 Identities = 792/1251 (63%), Gaps = 50/1251 (4%) Strand=Plus/Minus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 || ||||| ||| || | || |||||||| || | || |||| | ||| || ||| Sbjct 424673 TGGTCAATGAAAATACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCC 424614 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGC-AATCGATTGAACGCT 130674 ||| |||| || || | || | | || | ||||| ||| ||| ||||||| || Sbjct 424613 CAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTT-CGCTAATATATTGAACACT 424555 Query 130675 ACCGTTGTTGGCTATAATTTCGTTGCG-CATACTTTTATCGTACAATCCAAGCTGTACAA 130733 || || | ||| || | || |||| |||| || ||| | | || | | || Sbjct 424554 TCCATTATGGGCAATTAATT-GTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAAAA 424496 Query 130734 GATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGT 130793 ||||||||| ||||||| ||||| || || |||||| | || ||||| | Sbjct 424495 GATCTTTTAACAAATGAGGATTAACGACAAAGAATTCACCACTTAAAACACGTCTGTAAT 424436 Query 130794 AAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 ||||||| || || | |||||||||||||| || || || || ||||||| || | | Sbjct 424435 AAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAG 424376 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCT 130913 | || ||||| ||| | | |||||||| | | || || | | |||||| | Sbjct 424375 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTT 424316 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATT---GTTCCACATATCAAATT 130970 | ||| |||||||||||| | | || | || || |||||||||||||||| Sbjct 424315 TTAATAAATCCCAATCCCA---ATATTTATTATCTACTTTTGCATTCCACATATCAAATT 424259 Query 130971 GTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAG 131030 ||| ||| |||| || || ||||| || | ||||| || ||| || | | Sbjct 424258 GTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTG 424199 Query 131031 CCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTA 131090 ||| || ||| ||||| | ||||| || ||||| ||| | |||||| Sbjct 424198 CCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTA 424139 Query 131091 ATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGAC 131150 ||| ||| |||| | || || ||| || | | | ||||| | ||||| | | Sbjct 424138 ATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATC 424079 Query 131151 CCTGTATCCCAACGCCCACCGGTCTATG--TTTTAAATTACATTTACGCGAACATTCGGT 131208 | |||| || | || | |||||||| ||||| | | ||| || | || | Sbjct 424078 CTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGC-TTCTTTAACT 424020 Query 131209 GGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCT 131268 |||||| || | ||||| ||||| | |||||| | | ||||| || | Sbjct 424019 -GGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 423961 Query 131269 TTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAA-TTGATTTACACATA 131327 | ||||| | |||| ||| |||| | ||||| ||| | | || | Sbjct 423960 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA-A 423902 Query 131328 TTGACGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGGC 131385 | ||||| | ||||||||| || ||| ||| | || ||| | || |||||| Sbjct 423901 TGGACGCTAAATTACAAACAGCTACTTCATCAGGTGAT--GTATATTCAATAATTTCACA 423844 Query 131386 GCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG 131445 || |||||||| | || || || || ||||||| ||| || ||||| ||| ||||| Sbjct 423843 ACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATT-ACATG 423785 Query 131446 -GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA 131504 || || || | ||| || || || ||||| | ||| ||| |||| || | || Sbjct 423784 CATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTT--GTAATATAGCAAA 423727 Query 131505 --AGAGTTTTCGAGCAGACAATTGATATT-----TGTATTGGCCGCGTTTTTCGTAATTT 131557 | | | | | ||| | || || | || | ||| | || |||||| ||| Sbjct 423726 CCATAAATCTTGTGCA-AGAACTGTTTTTTTGCCTAAATTTTC----TTCTTCGTATTTT 423672 Query 131558 TCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTC---CAAATTGGGACATTCGCTG 131614 || || ||||||| | || || | || | || || |||||||| | Sbjct 423671 GTATATAATTTTTCAAATTCTT---CACCCCAAGTTTCACTTAAGCCTGGACATTCATTA 423615 Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTC---AACTCGCTTCATAAACAAATCCGGC 131671 || ||||||| | ||| | || | ||| |||| |||||||| ||||| || Sbjct 423614 GGGCACATTAAAGTCCA---GTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGT 423558 Query 131672 ACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-t 131730 ||||| | || || || | ||| | |||| | |||||| || |||| ||||||| | Sbjct 423557 ACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTA-CCATGATTTTTTCT 423499 Query 131731 CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 |||| |||||| || ||||| || | |||||| ||||| | ||| || || Sbjct 423498 TAAATCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGC 423448 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || || ||||| || || ||||||||||| |||||||| | | |||| | | || Sbjct 381366 AAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTT-CTACCATC 381308 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| ||||| |||| | | |||||||| || || | ||| |||||||| Sbjct 381307 TTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATC 381248 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||| || ||| | |||| | || || | | |||||| || ||||| || | Sbjct 381247 TTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCAACATCAAGAGTGATTGT 381188 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | |||||| || || || |||||| || || Sbjct 381187 TTTTCCGGTTAAAGTTTTTACGAAAATCTGCATACCTCCT 381148 >seq11 Length=1635978 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||||||||| || || ||||||||||| || ||||| | | ||||| | | |||| Sbjct 1474535 TACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTC-CATCTT 1474593 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | ||||| || ||| |||| | | |||||||| || || | || |||||||| Sbjct 1474594 CTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTT 1474653 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||| || ||| | |||| | || || | | |||||| || ||||| || | || Sbjct 1474654 GGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 1474713 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| |||||||||||||| Sbjct 1474714 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1474744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424930976755032