Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 >seq6 Length=831307 Score = 120 bits (132), Expect = 4e-22 Identities = 419/640 (65%), Gaps = 13/640 (2%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || ||||| |||| |||||||||||| |||||||||| || || ||||||| || || Sbjct 424436 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 424377 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT-TCTCCTTGATGCGTTC 110826 ||||||||||| ||||| | | |||| || | | || | | | ||| | || Sbjct 424376 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTT 424317 Query 110827 CTTGAGAACATCCCAGTCG---TAGTTGAGCT-TGGTTTCACCTTCCCACATGTCAAACT 110882 || | || |||||| || || || | | ||| | |||| |||| ||||| | Sbjct 424316 TTTAATAA-ATCCCAATCCCAATATTTATTATCTACTTTTGCATTCC-ACATATCAAATT 424259 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | | | |||||| || ||| ||| | | | | |||||| | || ||| | Sbjct 424258 GTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTG 424199 Query 110943 CCAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 |||||||| ||| | || | | || | |||||| |||||||| || | ||| Sbjct 424198 CCAATTCAACAGA-CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTT 424140 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 111061 | || || ||||| || || ||| ||| || | | | |||||| ||| || | Sbjct 424139 AATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 424080 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAAC 111120 ||||| || || | ||||||||||| || | |||| || ||||| || | ||| Sbjct 424079 CCTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTC-AGCTTCTTTAAC 424021 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| ||||||| ||||| | | | || |||| | |||| ||| || || || || Sbjct 424020 TGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 423961 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGCGA 111239 || | ||||| | ||| ||| | ||| || ||| | |||| | | || | Sbjct 423960 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACA-AATTTGCATAATGCAA 423902 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || || ||||| |||||||| ||||| ||| || || | |||||| || Sbjct 423901 TGGACGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAAC 423842 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||| || || ||||| || || ||||| |||||||| Sbjct 423841 ATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTT 423802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026810885600