Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 132 6e-26 >seq6 Length=831307 Score = 132 bits (146), Expect = 6e-26 Identities = 812/1290 (63%), Gaps = 16/1290 (1%) Strand=Plus/Plus Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTT 104379 ||| || || || || | || ||| | || |||||||||||||||||||| ||||| Sbjct 423153 TCATGCTACTCCTACATTATTTAATTCGGGAACACCAAGACCCCAAATGTCTTCATGCTT 423212 Query 104380 CCTTATCGCCAAC-AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTG 104438 |||| ||| || || ||||| | ||||| | || ||| | | | | |||| Sbjct 423213 T-TTATTATCAATGAAATCTGATTCAATAGAAGGTATATTTGAAACATTAAAGCAATGTG 423271 Query 104439 CGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATA 104498 | || || || || ||||| || || | || ||| | |||| | | Sbjct 423272 CATTGATTAGTAAAACAGCAGGAGGTATAGGTGTGGCTGTACAAGATATTAGAGGTCAAA 423331 Query 104499 AATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTAT 104558 | ||| || | || || |||||| |||| ||||| | |||||||| | | || | Sbjct 423332 ATTCTTACATCAGAGGAACTAATGGTATATCAAATGGTTTAGTTCCAATGTTAAGAGTTT 423391 Query 104559 TTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAG 104615 |||| | ||||| | |||||| |||||| ||| | |||| || ||| | || | Sbjct 423392 TTAATGATACAGCAAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGTTCTTTTGCTG 423451 Query 104616 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 104675 | ||| |||| |||||||| | ||||| | || || | || || | || || | Sbjct 423452 TATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAATCATG 423511 Query 104676 GTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 104735 || | || || | | || ||| | || | ||| | ||| | || ||| | || | Sbjct 423512 GTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGGTACCTGATTTATTTA 423571 Query 104736 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTC 104795 |||| ||||| |||| | | || ||| || | | || || | | || || Sbjct 423572 TGAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGTGCCCTAATGAATGTCCAGGCT 423631 Query 104796 TCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC 104855 | || | |||||| || |||||| | || ||||| ||||| |||||| | Sbjct 423632 TAAGTGAAACTTGGGGTGAAGAATTTGAAAAATTATATACAAAATACGAAGAAGAAAATT 423691 Query 104856 GGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT-CAAGTCTCAAACC 104914 | | || || | || ||| | ||| ||||| | ||| | |||| Sbjct 423692 TAGGCAAAAAAACAGTTCTTGCACAAGATTTATGGTTTGCTATATTACAAAGC-CAAATA 423750 Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAAC-CAAAAGAGTAATCAAAA 104973 || |||||| |||||| ||| | || ||||| || ||||| | ||| | || ||||| Sbjct 423751 GAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCG-AACCAAAA 423809 Query 104974 GAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAA 105033 ||||| || || || || ||| | ||| ||||| | |||| |||| Sbjct 423810 AAATTTAGGAACAATTAAATGTAGTAATTTATGTTGTGAAATTATTGAATATACATCACC 423869 Query 105034 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 105093 ||||| ||||| ||||| | || || || || | ||| | ||| ||| ||| Sbjct 423870 TGATGAAGTAGCTGTTTGTAATTTAGCGTCCATTGCATTATGCAAATTTGTTGATAGAGA 423929 Query 105094 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCT 105153 | ||| |||| ||| | ||||| | | || |||| |||| | | || | ||| | Sbjct 423930 AAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTT 423989 Query 105154 AAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 105213 | | | | ||||||| ||||||| ||| || ||| | ||| | ||| |||| || Sbjct 423990 AGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAGCTGAAAGATCAAATAAAAG 424049 Query 105214 ACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCA 105273 || | || ||||| | || || || || | || ||| ||| || |||| | | Sbjct 424050 GCATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGATA 424109 Query 105274 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333 ||| ||| || || ||||| || ||| | ||| | |||||||| || |||||| | Sbjct 424110 TCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTATGTATTA 424169 Query 105334 CGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393 || ||| | || | | || |||||| | || ||| ||||||||| | | | | Sbjct 424170 TGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTGGACCATATGAATCATATCA 424229 Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AGC 105452 ||| |||||| ||||| | | ||||||||||||| |||| | | | | | Sbjct 424230 AGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGT-GGAATGCAAAAGTAGATA 424288 Query 105453 TTCACTA---CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGA-AGGGTCTTCGTAAC 105508 | | || || |||| | | | || || | ||| | | | || | | || Sbjct 424289 ATAAATATTGGGATTGGG-ATTTATTAAAAAAAAAAATAAGTAAACATGGATTAAGAAAT 424347 Query 105509 AGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 105568 ||| || | || || ||||||||||| || || ||||||| || || ||||||||| Sbjct 424348 TCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAATTTTAGGAAATAATGAA 424407 Query 105569 TGCTTTGAACCCTACACGACGAACATCTAT 105598 | ||||||||| || || | ||||| ||| Sbjct 424408 TCCTTTGAACCATATACAAGTAACATTTAT 424437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255980807640