Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq7 100 2e-16 >seq7 Length=1057013 Score = 100 bits (110), Expect = 2e-16 Identities = 264/394 (67%), Gaps = 13/394 (3%) Strand=Plus/Minus Query 111721 TGATTTAAATAAACATGCGCATCTCCTA-TACAATGGATCAATTCCCAAGGCTCCAAACC 111779 ||||| ||||||||| |||| ||| | |||| || || ||||| || | ||| Sbjct 916090 TGATTATTATAAACATGAGCATTTCCCAATACA-TGAATAAATTCAGCTGGTTGTAAATT 916032 Query 111780 AGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACC 111839 | | ||||| ||||| ||||| | || | || |||||| || ||||| ||||| Sbjct 916031 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACACC 915972 Query 111840 TAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATA 111899 || || | ||| | ||||||||||| | |||||||| ||| | | ||||| Sbjct 915971 AAGACCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATA 915912 Query 111900 AAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAAGGGTCC---CCA 111956 ||||||||| | | ||||||||| || |||||||| || | | | | ||| Sbjct 915911 AAATTGACATAAAATATGACAAGGGGGTAATGCCATTTGATCTAAATCTTTTACATTCCA 915852 Query 111957 TGCACACATGATCATCCTTCTGC-TGTAGCGATTATGTTCAATGTCGTGTATGACATTCA 112015 |||||| | || || | ||| | ||| | ||| | || ||| | ||| | ||| Sbjct 915851 TGCACATAAAATAATTCGTCTACATGTCG-GATCGTTTTTAATTAAATTTATAATATTTT 915793 Query 112016 AGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTG-ACATCCAGTGTATGTT--GCCC 112072 || || || | |||||| | ||||||| || || | ||| ||||| || || | Sbjct 915792 TTAGTTGATCAACACCTTTATCTTTATAATCAGCATGCATATC---TGTATATTCAGCAC 915736 Query 112073 CATAGTGTCTCCATTGGAATCCATAAATAGGCCC 112106 || |||| |||||||| ||||| ||||| || || Sbjct 915735 CAAAGTGCCTCCATTGAAATCCGTAAATTGGACC 915702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391942442510743