Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq10 113 2e-20 >seq10 Length=1513010 Score = 113 bits (124), Expect = 2e-20 Identities = 479/741 (65%), Gaps = 32/741 (4%) Strand=Plus/Minus Query 65117 AAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAA 65176 ||||| |||||||||||||| | ||| | || ||||| ||||| | | | ||| Sbjct 454652 AAATTTATATTGTTTGAACCGACAAATGTTTGCGCCATATTTATAATAGTTTGTTGTAAT 454593 Query 65177 CTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACT 65236 | |||||| ||||||||| | |||||| | | ||| ||| || ||||| ||| Sbjct 454592 GATGATTCACCATGATGATATGCACTATGTTCTGCAATATAACCAACAAGCTGAGCGACT 454533 Query 65237 TTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATT 65296 || ||| || ||||||| ||||||| | ||| || | ||| | | | | Sbjct 454532 TTACATTCATTTCTTAAATTTCTTTTAAAGCAACCATATAAAACTTTTCTTTGCCCTGGT 454473 Query 65297 TTCAATCCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATG 65356 ||| |||||||||| | ||| || || ||||| || ||||||| | || ||| ||| Sbjct 454472 TTCCATCCATCCATAATATTTGGTATACTTCTTTCTGTATCATATCTAGAATAATATATT 454413 Query 65357 AATTCTTTGTTAATAAATTCTTCATATGAAACACTCGTATTATCTGTATTCAA-ATAACT 65415 |||||||| || | ||| || | |||||| | | || | || | | | |||| ||| Sbjct 454412 AATTCTTTATTTACAAAATCATAATATGATA-AATCTTTTTCTTTATGATCAACATATGA 454354 Query 65416 ATCGCGATTATATTTTTCTAACCATTCTTTTCTA---TCACTTGAGCGTTTTTATTAAAT 65472 | | | || | |||| || |||| ||| | | ||| || |||||| |||| Sbjct 454353 ACCAAGTATAAAATTTTGTAGCCATAATTTACGATCTTCAATT--CTTTTTTTACTAAAA 454296 Query 65473 ATTAAATCAATGGTCTCATCACTTTCT-TTGCCTGTATGTTCAAATCCAACAATTTT--- 65528 | |||||| | ||| || | ||| | ||||| | ||| ||||||||| Sbjct 454295 GCCATATCAATTGAATCACCA-TCTCTATCTCCTGTCCATAGAAA---AACAATTTTATG 454240 Query 65529 -CTTT-----TGTTTAAAATATTCACGAAATTCTTTTCCTGTGCTTGTTCCAAGACCTTT 65582 |||| | | ||| |||| ||||||||| | || || || |||||||| Sbjct 454239 ACTTTGAATATCTGAAAAGTATTGTTTAAATTCTTTATCAGTTGAAGTACCCAGACCTTT 454180 Query 65583 ATAATATTTGATTTTCCA--AGAATTCACGTTTATACTTCCTTTCCATTCATTGTATTCA 65640 || ||||| |||||||| ||| | || | ||| ||||||||| | ||||| Sbjct 454179 GTAGTATTTTATTTTCCATCCTAAT--AAATTAGTGCTTTCTTTCCATTGTTCATATTCT 454122 Query 65641 CCTTCATTGTAAAAGACAATGGT--TTGATTACCCCTATGTGCCTTTAAAATCGGTGTAT 65698 | ||||||||| || || | |||||| || | || |||| | || || ||| Sbjct 454121 GC--GATTGTAAAAAACGATAATTCTTGATTTCCTTTTTGAACCTTAACTATAGGAGTA- 454065 Query 65699 TCATAAACCCAATAAATCCAGGTAT-CTGCAAAAGACCCGACCACTGTGTGTGAAACAAA 65757 || | | ||| || || ||| | ||||| | | ||| | | |||| || | Sbjct 454064 ACAAATTCACAAAGAAACCCTTTATGTTTTAAAAGGCTAGGCCAAAATTTATGAATCATA 454005 Query 65758 TTAATACACAACCCTTTAATATGATGACCATCCAAATCCGCGTCTGTCATAATAAGAACA 65817 ||||| | ||||| ||||| || || || ||||| ||||||||||| | | | Sbjct 454004 TTAATTAATAACCCCTTAATGTGGGACCCGTCATAATCCTGATCTGTCATAATCATTAAA 453945 Query 65818 CGACCATATCTCAAATCATTT 65838 |||||||| || || ||| Sbjct 453944 GATCCATATCT-AAGTCCTTT 453925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235678101376650