Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 3e-15 >seq7 Length=1057013 Score = 96.9 bits (106), Expect = 3e-15 Identities = 209/311 (67%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 126080 ATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCC 126139 |||||| ||||| ||| |||| ||| ||| |||||| |||||| | | | Sbjct 916091 ATGATTATTATAAACATGAGCATTTCCCAATACATGAATAAATTCAGCTGGTTGTAAATT 916032 Query 126140 ACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACC 126199 |||| ||| ||| | | || ||| | || || ||| ||||||||||| |||||||| Sbjct 916031 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACACC 915972 Query 126200 TAAAAATATATCAGCACTTCTTTGATA--TAATTGACAATTTAATTTACCCTCTTGTACG 126257 | | || |||| | ||||||||| |||| ||| |||||| || || || Sbjct 915971 AAGACCTAAATCACAAGATCTTTGATACATAAT--ACATGATAATTTTCCATCAAAAACA 915914 Query 126258 TAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTC 126317 ||||||||| | | | || ||||| |||||||||||| ||| | || | |||| Sbjct 915913 TAAAATTGACATAAAATATGACAAGGGGGTAATGCCATTTGATCTAAATCTTTTACATTC 915854 Query 126318 CATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTAATTTGTTGTATAACTGAT 126377 ||||| | | ||| |||| | | | |||| | |||||||| | ||||| | Sbjct 915853 CATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATATTT 915794 Query 126378 TTTAATTGATC 126388 |||| |||||| Sbjct 915793 TTTAGTTGATC 915783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408595108356827