Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 2e-15 seq11 87.8 1e-12 >seq6 Length=831307 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| ||||| ||||| | || || ||| ||||| ||||||| ||| | || Sbjct 381383 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 381442 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | || || ||| ||||| || ||||||||| | || || | Sbjct 381443 GATACTATTGAAAAC--GTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATC 381500 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| ||||||||||| ||||||||||| || |||| | | || || ||||||| Sbjct 381501 AGCAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGATTACA 381560 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 | || |||||||| || || ||||| ||||| Sbjct 381561 ATATTCAAAAAGAATCTACCTTACATTTAGTTTT 381594 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||| | || || ||| || || ||||||| ||| || Sbjct 381155 ATGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 381214 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| || ||||||||| |||| || | Sbjct 381215 GATACCATTGAAAAT--GTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCTGATC 381272 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||||||||||||||||||||| || || | | | | || || |||| Sbjct 381273 AACAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACA 381332 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||| |||||||| ||||| || || ||||| Sbjct 381333 ACATTCAAAAAGAATCGACTTTACACTTAGTTTT 381366 >seq11 Length=1635978 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| ||||| ||||| | || || ||| || || ||||||| ||| Sbjct 1474747 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1474688 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || | || | ||| || ||| |||||| || |||||||| |||| | Sbjct 1474687 TCTGATACAATTGAAAAT--GTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTG 1474630 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | |||||||| || ||||||||||| || || | | | | || || || | Sbjct 1474629 ATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACT 1474570 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 | ||||| ||||||||| || || |||||||| Sbjct 1474569 ATAACATTCAAAAAGAGTCAACCTTACATTTGGT 1474536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355859533194747