Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 152 3e-32 seq11 125 5e-24 >seq6 Length=831307 Score = 152 bits (168), Expect = 3e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| | || |||||||| |||||||| || ||||| | | Sbjct 381155 ATGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 381214 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || ||| |||| ||||| | ||||| || ||||||||| | || || ||||| Sbjct 381215 GATACCATTGAAAATGTTAAAGC-TAAAATCCAAGATAAAGAAGGTATTCCTCCTGATCA 381273 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| |||||||| |||||| | ||||| | | || || || ||||| Sbjct 381274 ACAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAA 381333 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || ||||| ||||||||||| || ||||||| Sbjct 381334 CATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 381381 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || |||||||| || ||||| || ||||| | | Sbjct 381383 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 381442 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | ||| |||||| || ||||||||| | || || ||||| Sbjct 381443 GATACTATTGAAAACGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 381502 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || ||||| ||||| || |||||| | ||||||| | || ||| |||||||| Sbjct 381503 CAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGATTACAAT 381562 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || ||||||||||||||||| || ||||||| Sbjct 381563 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 381609 Score = 118 bits (130), Expect = 7e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 |||||||| || ||||| || ||||| | | || ||| |||||| | ||| ||| Sbjct 380954 GGAAAAACAATTACTCTTGATGTTGAACCATCAGATACTATTGAAAACGTTAAAGCTAAA 381013 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 ||| || ||||||||| | || || |||||||| | ||||| || || || |||||| Sbjct 381014 ATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTCGCTGGAAAACAA 381073 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 | || || | | | || || |||||||| || |||||||| || || ||||| ||| Sbjct 381074 TTAGAGGATGGAAGAACACTATCTGATTACAATATTCAAAAAGAATCTACCTTACACTTA 381133 Query 23818 GTTTTAAGGTTGCGAGGAGG 23837 |||||||| || ||||||| Sbjct 381134 GTTTTAAGATTAAGAGGAGG 381153 >seq11 Length=1635978 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| | || |||||||| |||||||| || ||||| | Sbjct 1474747 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1474688 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||||| | ||||| |||||| | || |||||||| | || || || Sbjct 1474687 TCTGATACAATTGAAAATGTTAAAGCAAAAA-TCCAAGATAAAGAAGGAATTCCCCCTGA 1474629 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | ||||| || || || |||||| | ||||| | | | || ||| || || Sbjct 1474628 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTA 1474569 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||||||||| || |||||||| || Sbjct 1474568 TAACATTCAAAAAGAGTCAACCTTACATTTGGT 1474536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006877015788