Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6 123 6e-23 seq3 96.9 8e-15 >seq6 Length=831307 Score = 123 bits (136), Expect = 6e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | ||| ||||||||||| | ||||| || | | ||||| |||||||||| || Sbjct 381358 GTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTG 381299 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || || || || | || |||||| || || ||||||||||| || |||||||| || Sbjct 381298 TTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGGAT-TT 381240 Query 225630 TTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | || || ||| ||| ||||| || || | ||| || || | ||||| || || || | Sbjct 381239 TAGCTTTAACATTTTCAATGGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTTCCGG 381180 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 | |||||||||| ||| | ||||| Sbjct 381179 TTAAAGTTTTTACGAAAATCTGCAT 381155 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||||||||| | || ||||| || ||||||| || || ||| Sbjct 381579 GTAGATTCTTTTTGAATATTGTAATCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCA 381520 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | |||||| || || || || |||||||| || ||||| || ||| || || Sbjct 381519 GCAAAAATTAATCGTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAAT-TTTAGCTTT 381461 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || ||| || || ||||| | ||| || || | || || || || || || || || Sbjct 381460 AACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGT 381401 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | |||||| Sbjct 381400 TTTTACAAAGATTTGCAT 381383 Score = 95.1 bits (104), Expect = 3e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||||||||| | | ||||| ||||| |||| || || ||| Sbjct 381123 GTAGATTCTTTTTGAATATTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCA 381064 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || | || |||||| || || || |||||||| || ||||| || ||| || || Sbjct 381063 GCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAAT-TTTAGCTTT 381005 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 || ||| || || ||||| | ||| || || | || || || || || Sbjct 381004 AACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCC 380954 >seq3 Length=540481 Score = 96.9 bits (106), Expect = 8e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||||||||| || |||||||| ||||||||||||||||| |||||| Sbjct 470986 AATATTTGACCATCAGTAATTGAAATAACATTAGTAGGGATATAAGCAGATACATCATTA 470927 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTA 4561 | |||||| | ||||||||| || |||| Sbjct 470926 TTTAATGTTTCAATAACAGGTAATGCAGTTA 470896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192521100378734