Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 470 2e-127 seq10 223 5e-53 >seq6 Length=831307 Score = 470 bits (520), Expect = 2e-127 Identities = 1003/1481 (68%), Gaps = 39/1481 (3%) Strand=Plus/Minus Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 ||||| ||||| ||||||||||| | |||||||| ||||| |||||||| | ||| ||| Sbjct 424436 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 424377 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 || |||||||||||||| | | | | |||||| | |||||| | || ||||| | | Sbjct 424376 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTT 424317 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAA---CATCCCAAAGATCGTATTGT 77333 |||| | | |||||||||| | | ||| ||| ||| | ||| ||||| Sbjct 424316 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 424257 Query 77334 AGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCT 77393 | ||||| | || || || | ||||| |||||| ||||| | || || Sbjct 424256 AATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTGCC 424197 Query 77394 AGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAAT-CTTCTTATTGAG 77452 | |||| | | ||| || || | ||||| || ||||| || || ||||| ||| | Sbjct 424196 AATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAA 424138 Query 77453 ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCC 77512 |||| ||||| | ||| | ||||| |||||| ||||| | |||||||||||| Sbjct 424137 TTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCC 424078 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGG 77572 || ||||| || |||||||||||||| || ||||| || ||| ||||||| || || Sbjct 424077 TTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGCTTCTTTAACTGG 424018 Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 ||||||||| | || |||||||||| | ||||||| || | |||| | || | Sbjct 424017 ATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATA 423958 Query 77633 TAGTTTAAGAAAATCAAA-----TCTTCCATCTAT-AACAAACATGTTCAAAGCTATAGA 77686 || ||| ||||| ||| | || ||||| |||||| || || || || || Sbjct 423957 TAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGA 423898 Query 77687 TGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAG 77746 |||| ||||||||| ||||| |||| || | ||||| || || || ||||| Sbjct 423897 CGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAA 423838 Query 77747 ATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTT 77806 |||||||||||| || || || | ||||| |||||| || ||| |||| || || Sbjct 423837 ATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATTACATGCATCTTT 423778 Query 77807 ATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGAC 77866 ||| | ||| | || || ||||| || || | || | ||||| | || || | Sbjct 423777 ATATAACATATATGGTACACCAGTTTCTATTTG-GCTTTG-TAATA---TAGCAAACCA- 423724 Query 77867 TCTAGCTTTTATCATAGAT-TTGTATCGCC-----TCTCTCTTTCATATTGAGTATATAG 77920 | | ||| | | | | || | | ||| | ||| ||| |||| ||||||| Sbjct 423723 TAAATCTTGTGCAAGAACTGTTTTTTTGCCTAAATTTTCTTCTTCGTATTTTGTATATAA 423664 Query 77921 CCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAA 77980 ||||||||| || |||||| ||| || || || |||||||| |||||||| || Sbjct 423663 TTTTTCAAATTCTTCACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAA 423604 Query 77981 TGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 | ||||| || |||||| |||| ||||||||| | |||||||| ||| | |||| Sbjct 423603 AGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 423544 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 ||||| ||| || | ||| |||||| || || ||| ||| | | ||| | ||| || Sbjct 423543 AAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 423484 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACC 78160 | |||||| |||||||||||||| | ||||| || | | || || ||| || Sbjct 423483 AAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCC 423424 Query 78161 TCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 78220 || ||||||| |||||| || || | |||| ||||||| |||||||||| | ||| || Sbjct 423423 ACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATT 423364 Query 78221 AGATGTTCCATTTGTTCCAGAAAT---ATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||| | ||||| ||||| || | || || || | | ||||| || || | Sbjct 423363 TGATATACCATTAGTTCCTCTGATGTAAGAATTTTGAC---CTCTAATAT--CT--TGTA 423311 Query 78278 TATC----CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGT 78333 | | ||||| |||||||| | ||| || | || || | || ||||| || Sbjct 423310 CAGCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAA 423251 Query 78334 AGATACCCTCTATACTGTCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392 | ||||| ||||| ||| ||| || ||| || ||| || ||||||||| | Sbjct 423250 ATATACCTTCTATTGAATCAGATTTCATTGATAATAA-AAAGCATGAAGACATTTGGGGT 423192 Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGT 78452 ||||| | |||||||||||| |||| ||||| ||||| |||||| || | | Sbjct 423191 CTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAGTATTTTTGTGACATT 423132 Query 78453 AGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGC 78512 | || |||||||| | ||| ||| | || | ||| ||||||| | ||| | | Sbjct 423131 AAATGATATGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTC 423072 Query 78513 ATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTT 78572 || || | ||| ||||| | ||||| | |||||||| || || ||||| || || Sbjct 423071 ATTAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTT 423012 Query 78573 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 || || |||||||| |||||||| | || ||| ||||| Sbjct 423011 TCTAATGTTTTAAATCCAAAATAATCATAATTAAAATCTCT 422971 >seq10 Length=1513010 Score = 223 bits (246), Expect = 5e-53 Identities = 375/535 (70%), Gaps = 12/535 (2%) Strand=Plus/Minus Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA--TTAGTCCACGTT 48219 ||||||||||||||||| ||||| ||| |||||| | ||| | | ||| | ||| Sbjct 1394443 CCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTTT--GTT 1394386 Query 48220 TTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAA 48279 |||| | |||||||||||| ||| |||| ||| ||||| ||||| || ||| Sbjct 1394385 TTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCAT 1394326 Query 48280 ATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG--TGTATCCACCGTTGTGCCCAATC 48337 || || ||| || | || | ||||| | |||||| |||||| Sbjct 1394325 TAGCTACAATTCTTTCAGCAAAAGAG--TTCGTATCATTTATCCATTTAGCTGCCCATAA 1394268 Query 48338 AGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA-T 48396 || || || |||| || || |||| ||||||| ||| | || || | || | Sbjct 1394267 TGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATA--AATTTAATCTCTCT 1394210 Query 48397 TGCT-ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCA 48455 | || ||| ||| ||| |||| ||||| | |||||| |||| ||||| ||||||||| Sbjct 1394209 TTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCA 1394150 Query 48456 ATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAAT 48515 | || || ||||| | ||||| | | ||||| | || ||||| || | ||||| Sbjct 1394149 ACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAAT 1394090 Query 48516 CGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGT 48575 ||| ||||| || |||||||||||||||||| ||||||||||||| |||||| Sbjct 1394089 TTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGT 1394030 Query 48576 TTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATA 48635 || ||||||| ||||| || | | | ||| | |||| || | ||| |||||| | Sbjct 1394029 TTTATAAAATGCTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAAATCACTTGATAAA 1393970 Query 48636 TCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATA 48690 |||| ||||||||| ||||||||||| ||||| ||||||||||| | |||||||| Sbjct 1393969 TCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATA 1393915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694663060299040