Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 486 3e-132 seq10 210 3e-49 >seq6 Length=831307 Score = 486 bits (538), Expect = 3e-132 Identities = 1032/1525 (68%), Gaps = 33/1525 (2%) Strand=Plus/Minus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 |||||||||||| | ||||| ||| || || | || ||||| ||||| || Sbjct 424482 ATGAGGATTAACGACAAAGAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGT 424423 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||||||||| | |||||||| ||||| |||||||| | ||||||||| || |||||||| Sbjct 424422 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 424363 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 ||| | | | | |||||| | |||||| | || ||||| | ||||| | | ||| Sbjct 424362 TGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATCCCA 424303 Query 75886 ATCCCAA-AGATCTGATGGTACAA---CATCCCAGAGATCGTATTGTAGAATTCCGTTGC 75941 ||||||| | | | || ||| ||| ||| | ||| |||||| ||||| | || Sbjct 424302 ATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGGC 424244 Query 75942 TAGCATATGATCCATTATATGTTTCGTAAG-TCC-CGTCCTTTTCAGCTAGTTCGCAACT 75999 | || || | ||||| ||| || | ||| | | ||| | || | ||| | Sbjct 424243 TTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGT--GCCAATTCAACAGA 424186 Query 76000 CGCCTCTAACGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTATTAAGATCTTGCGCTT 76058 | ||||| ||| | ||||| || ||||| || || ||||| |||| |||| |||| Sbjct 424185 CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAAT-TCTTTAGCTT 424127 Query 76059 CAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAA 76118 | | ||| | ||||| |||||| ||||||| |||||||| ||| || ||||| | Sbjct 424126 CTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTA 424067 Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 | |||||||||||||| || ||||| || ||||||||||| || || |||||||| Sbjct 424066 TTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGCTTCTTTAACTGGATAATAATTTC 424007 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 | || |||||||||| | |||||| || | |||| | || | || ||| || Sbjct 424006 TTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTTTTAA 423947 Query 76239 AATCAAATT-----TTCCATCTATCA-CAAA----CATATTAAGAGCTATAGATGCTAGA 76288 ||| ||||| || ||||||| |||| |||| | || || || |||| | Sbjct 423946 AATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAAT----GCAATGGACGCTAAA 423891 Query 76289 TTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTA 76348 |||||||| ||||| |||| || | ||||| || || || |||| ||||||| Sbjct 423890 TTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTA 423831 Query 76349 CACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGA 76408 || || || ||||| | ||||| |||||| || ||||||| || ||||| | Sbjct 423830 CATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATTACATGCATCTTTATATAAC 423771 Query 76409 ACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCT 76468 | | | || |||||||| || || || | |||| ||| | || || Sbjct 423770 ATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGCA 423711 Query 76469 TTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCA 76528 | | | |||| | || ||| ||| |||| ||||||||| ||||||||| Sbjct 423710 AGAACTGTTTTTTTGCCTAAATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAATTCT 423651 Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588 || |||||| ||| || || ||||||||||| || ||||| || | ||| | | Sbjct 423650 TCACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTCTTA 423591 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648 | |||||| || | ||||||||| | |||||||| ||| | |||| ||||| ||| || Sbjct 423590 TTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGA 423531 Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708 | ||| |||||| || || ||| ||| | | ||||| || || | |||||| ||| Sbjct 423530 GCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAA 423471 Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATA 76768 ||||||||||| | ||||| || | | ||| || ||| || || ||||||| | Sbjct 423470 TGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACA 423411 Query 76769 TATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTT 76828 ||||| || || | |||| ||||||| |||||||||| | || || ||| ||||||| Sbjct 423410 TATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGATATACCATTA 423351 Query 76829 GTTCCAGAAAT---ATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCT 76885 ||||| || | || || || | | ||||| | || | ||||| ||| Sbjct 423350 GTTCCTCTGATGTAAGAATTTTGAC---CTCTAATATCTTGTACAGCCACACCTATACCT 423294 Query 76886 CCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTA 76945 ||||| ||||| || | ||||| | || ||||| ||| | || || ||||| | Sbjct 423293 CCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAA 423234 Query 76946 TCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATT 77004 ||| ||| || ||| || ||| || ||||||||| | ||||| | ||| Sbjct 423233 TCAGATTTCATTGATAATAA-AAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATT 423175 Query 77005 AAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT 77064 ||| |||||||||| |||||||| || |||||| || | || || |||||||| | Sbjct 423174 AAATAATGTAGGAGTAGCATGAGTAAAGTATTTTTGTGACATTAAATGATATGTTTCTAA 423115 Query 77065 AACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGG 77124 | | ||| | ||| | ||| ||||||| || || | ||| || | ||| ||||| Sbjct 423114 AGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGTTGAGG 423055 Query 77125 TCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACC 77184 ||||| | | | |||||||| || || ||||| || |||| || |||||||| || Sbjct 423054 ACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAATCC 422995 Query 77185 AAAATAGTTGTATGAAAAGTCTCTT 77209 |||||| | || ||| |||||| Sbjct 422994 AAAATAATCATAATTAAAATCTCTT 422970 >seq10 Length=1513010 Score = 210 bits (232), Expect = 3e-49 Identities = 382/549 (70%), Gaps = 20/549 (4%) Strand=Plus/Minus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA--TTAGTCCACGCT 46708 ||||||||||||||||| ||||| ||| |||||| | ||| | | ||| | | | Sbjct 1394443 CCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTTT--GTT 1394386 Query 46709 TTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGA 46768 |||| | ||||||||| || ||| |||| ||| ||||| ||||| ||| || Sbjct 1394385 TTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCAT 1394326 Query 46769 ATGCGACAAGTCTCTCTCCGTAACTG---GCATCATTATGAATCCACCTTTGAGC--CCA 46823 || |||| ||| || | || | | |||||| ||||| || ||| || Sbjct 1394325 TAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTT---ATCCA---TTTAGCTGCCC 1394272 Query 46824 ATCAGCCTTT-TTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttttt 46882 || | |||| || |||| || || |||| ||||||| ||| | || || | | Sbjct 1394271 ATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATA--AATTTAATCT 1394214 Query 46883 CA-TCACT-ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTT 46940 | | || ||| ||| ||| |||| ||||| | |||||| |||| || || || || Sbjct 1394213 CTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATT 1394154 Query 46941 TTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACA 47000 ||||| ||| || ||||| | ||||| | | |||||| | || ||||| ||| | | Sbjct 1394153 TTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAA 1394094 Query 47001 AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATAC 47060 |||| || ||||| || ||||||||||||||||| ||||||||||| | || Sbjct 1394093 AAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCAC 1394034 Query 47061 ATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGA 47120 |||||| ||||||| ||||||| | | | ||| | |||| || | ||| |||| Sbjct 1394033 ATGTTTTATAAAATGCTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAAATCACTTGA 1393974 Query 47121 TATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 || ||||| ||||||||| ||||| ||||| ||||| ||||||||||| | |||||||| Sbjct 1393973 TAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATAC 1393914 Query 47181 ATCACGATA 47189 ||| |||| Sbjct 1393913 TTCAGGATA 1393905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712928509379520