Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq11 100 7e-16 seq6 95.1 3e-14 >seq11 Length=1635978 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||||||||| ||||| || || | ||| ||||| |||||||||| ||| || Sbjct 1474548 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1474607 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | || || || || | | |||||||| || ||||| |||||| ||| Sbjct 1474608 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1474667 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || || || || |||||||| || ||||| || || | || Sbjct 1474668 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1474727 Query 152088 TTCACGAAGACCTGCATTTT 152107 || || |||| |||||||| Sbjct 1474728 TTTACAAAGATTTGCATTTT 1474747 >seq6 Length=831307 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| |||||||| || |||||||| | ||| ||||| || ||||||| ||| || Sbjct 381579 GTAGATTCTTTTTGAATATTGTAATCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCA 381520 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | | ||||| || | | ||| ||||| || ||||||||||| ||| Sbjct 381519 GCAAAAATTAATCGTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTA 381460 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | | ||||| || || ||||||||||| ||||| || || | || Sbjct 381459 ACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTT 381400 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 381399 TTTACAAAGATTTGCAT 381383 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| |||||||| || |||||||| | || ||||| ||||| |||| ||| || Sbjct 381123 GTAGATTCTTTTTGAATATTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCA 381064 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | || || || || | | ||| ||||| || ||||||||||| ||| Sbjct 381063 GCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTA 381004 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 || | || | | ||||| || || ||||||||||| ||||| || Sbjct 381003 ACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCC 380954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153811028219531