Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq10 219 4e-52 >seq10 Length=1513010 Score = 219 bits (242), Expect = 4e-52 Identities = 566/845 (67%), Gaps = 43/845 (5%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| ||||||||| || |||| | |||| || |||||||| || || | Sbjct 1394768 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1394709 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATAT--ACAGCTTT---A 23319 ||| ||||| ||||| || ||||||||| | || || | | |||| | Sbjct 1394708 TAAAGATATTAAGTCCATCCAACTAAATGGATT-----TTTTGAATGGAAAACTTTGGAA 1394654 Query 23320 CATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCA 23379 || ||| | ||| | | ||| || ||||||||||| |||||| |||| || || Sbjct 1394653 CAACCTAAACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCT 1394595 Query 23380 T-AGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGA 23438 | | || || || |||| | || | | ||| | | ||| | |||| | Sbjct 1394594 TGAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTC 1394535 Query 23439 AACAGCATCTTTAATTAT---TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAAT- 23494 ||| || ||||||| ||| |||||||| ||||| || | |||||| | Sbjct 1394534 AACTGCTTCTTTAACTATATTTTGAACAACCTCTTCTGG--TAATT---TATTTTCCAGC 1394480 Query 23495 -ACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCA 23553 | || | | ||| || |||||| |||| |||||||| ||||||||||||||| Sbjct 1394479 AAGCTATAAATTAAGCAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCA 1394420 Query 23554 TTAGAAAATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAA 23612 ||| ||||||||| || || ||| || | ||||||||| ||||||||||||| ||| Sbjct 1394419 TTACTAAATGTTAAACCATGTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAA 1394361 Query 23613 TGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGT 23672 ||| ||| || || || || ||| ||| || |||| | | | |||| | Sbjct 1394360 ACTTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGA 1394301 Query 23673 TGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA-A 23731 || |||| |||||||| || ||| | | ||| | |||| || | Sbjct 1394300 G---TTCGTATCATTTATCCATTTAGCTGCCCA-TAATGCTTTATTTTTTATTGCTGGTA 1394245 Query 23732 TTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCT-TCATT---ATCTGTTATATATGTA 23787 | ||||||| || | || | || ||| ||| || || ||| | ||||| || Sbjct 1394244 TATTTTCAATAGCAT----GAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTA 1394189 Query 23788 TCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAA 23847 ||||||| ||||||||| ||||||| || |||||||||| ||| || ||||| ||||| Sbjct 1394188 TCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAA 1394129 Query 23848 AAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTA 23907 || | | |||||| | ||| || || | |||||| | ||||||||||||| Sbjct 1394128 AACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAAT 1394069 Query 23908 ACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT-- 23965 || || ||||||||||| ||||| || || || |||| |||||||||||| |||||| Sbjct 1394068 ACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGCTTTTCATTT 1394009 Query 23966 -CAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTC 24024 || | |||||||| | || || | ||| |||||||||| | ||| ||| | ||| Sbjct 1394008 ACATT---TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTC 1393952 Query 24025 CAAAA 24029 ||||| Sbjct 1393951 CAAAA 1393947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521483691205400