Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq7 125 1e-23 seq4 113 6e-20 >seq7 Length=1057013 Score = 125 bits (138), Expect = 1e-23 Identities = 271/395 (69%), Gaps = 18/395 (5%) Strand=Plus/Plus Query 50478 GATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT-TG 50536 || ||||| || ||||||| ||||||||||| || ||||| || || | | || || Sbjct 915696 GACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGATATG 915755 Query 50537 CGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACG-TTGA 50595 | | | |||| ||| | |||| || |||||||| |||| ||||||| || | Sbjct 915756 C-ATGCTGATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATTTAATTAA 915814 Query 50596 AAACAAACCCCGACGATCGGCGTATT--TTAATGACCGCCTGGAATCCAACCGATATAGA 50653 |||| | || | | | | || ||| || ||| || |||||| || ||| |||| Sbjct 915815 AAACGATCCGACATG-TAGACGAATTATTTTATGT--GCATGGAATGTAAAAGATTTAGA 915871 Query 50654 TCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCC----ACAGACAATG 50709 ||||| | ||||| || |||||| |||||||||||||||||| | || ||| Sbjct 915872 TCAAATGGCATTACCCCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAAT- 915930 Query 50710 TTTTATCCTGTCA-ATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAAC 50768 |||| ||| |||| |||||||||| |||| | ||| | || ||||| ||||| Sbjct 915931 ---TATCATGTATTATGT-ATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAAT 915986 Query 50769 GTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGA 50828 | ||||| || || |||| || ||| |||| || |||| || | |||| | Sbjct 915987 ATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCT 916046 Query 50829 GAATTTATTCATACGTTAGGAGACGCTCATATTTA 50863 |||||||||||| || ||| | |||||| |||| Sbjct 916047 GAATTTATTCATGTATTGGGAAATGCTCATGTTTA 916081 >seq4 Length=705592 Score = 113 bits (124), Expect = 6e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 ||||| ||||||| || || | || || ||||||| ||||| || | ||||| || Sbjct 41187 TTTAATATTTGAATTCGACCTTCTTTATTGGGTAATGATATTTCAATATGTAATTCAAAT 41246 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || || |||||||| |||||||| || ||||| || ||| || |||||||| || | | Sbjct 41247 CGGCCTGGTCTTAACAATGCTTCATCGATTAAATCTATTCTATTTGTCATACCAATTAAT 41306 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTA 156045 | || || ||||| | ||| || |||||||| || ||||||||||| |||| Sbjct 41307 AGTATATTATTTAAGCTATTTACTCCATCTATTTTTGATAATAATTGATTAACTA 41361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667069688291160