Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq252 163 2e-35 >seq252 Length=6430 Score = 163 bits (180), Expect = 2e-35 Identities = 377/561 (67%), Gaps = 8/561 (1%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 ||||||| ||| | ||| ||||| || | || || |||| || || || ||| Sbjct 5078 TGAGCATTTCCCAATACATGTATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATC 5137 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 || | || || | ||||||| |||||| || ||||| || || | || | |||| Sbjct 5138 ATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACACCAAGACCTAAATCACAA 5197 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACA 101887 ||||||||||||| ||| || | ||||||||| | ||||||||||||| ||| | | Sbjct 5198 GATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATAAAATTGACATAAAATA 5257 Query 101888 TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATC 101947 |||||||| || || |||||| | | ||| |||||||| ||||| | | || Sbjct 5258 TGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCACATAAAATAATT 5317 Query 101948 CTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCT 102007 | |||| ||| || | |||| || || || | | |||||| || ||||| ||| Sbjct 5318 CGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATATTTTTTAACTGATCAACACCT 5377 Query 102008 TCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAA 102066 | |||||||||| || | | | || ||||||| || || || |||||||| ||||| Sbjct 5378 TTATCTTTATAATCAGCATGC-ATATCTGTATATTCAGCACCAAAGTGCCTCCATTGAAA 5436 Query 102067 TCCATACACAGGTCC-AAG--ATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAA 102123 ||| || | || || ||| || |||| ||| || |||| || | |||||||| Sbjct 5437 TCCGTAAATTGGACCTAAGTCATTAACTTC-TCTATGAAATAATTTCCTA--TTATCTAA 5493 Query 102124 AAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCT 102183 ||| ||| | ||||| || ||||| || ||| | || ||| || | Sbjct 5494 AAACTCTCTTGTCCCATTAGCTTCCCATATTCTTACGTTTTTTTCTAATAATGTATTTCC 5553 Query 102184 GTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCT 102243 | || ||| || |||||||| | || ||||||| | |||||| ||||| | | Sbjct 5554 ATTTGTTTCTCCCCTTATAAACCATAGCAACTCTTCAATGATACCTCTTACAAATAATTT 5613 Query 102244 CTTAGTAGTTAAAAGTGGAAA 102264 || || ||||| | |||||| Sbjct 5614 TTTTGTTGTTAATAATGGAAA 5634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361204134613190