Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2587 237 2e-57 seq3686 190 2e-43 >seq2587 Length=1884 Score = 237 bits (262), Expect = 2e-57 Identities = 702/1068 (66%), Gaps = 42/1068 (4%) Strand=Plus/Plus Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | ||||| Sbjct 832 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 891 Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 53302 || || ||||||||||| | | | | |||||| | |||| | | || ||||| | | Sbjct 892 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 951 Query 53303 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 53359 |||| ||||||| |||| | ||| | |||| Sbjct 952 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 1011 Query 53360 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 53416 | || || | || || | || | ||| ||||| || |||||||| || ||| | Sbjct 1012 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 1068 Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 53475 || | |||| | | ||||| ||| | ||||| || ||||| || || ||||| ||| Sbjct 1069 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 1127 Query 53476 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 53533 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 1128 TAATTCTTTAGCTTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 1185 Query 53534 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 53593 |||||||| || || || || |||||||||||||| ||||| || |||| |||||| | Sbjct 1186 AATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTA 1245 Query 53594 ATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACA 53653 | ||||||||||| | || |||||||||| | ||||| ||| | ||| | | Sbjct 1246 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 1305 Query 53654 TCCTTCAGTTTGAGAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCA 53707 || | | ||| ||||| ||| || | ||||| ||||| || |||||| Sbjct 1306 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA 1365 Query 53708 ATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 53767 || || || | ||||||||| ||||| |||| || | ||||| || || ||| Sbjct 1366 ATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 1425 Query 53768 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 53827 || |||||| || || || ||||||||||||| |||||| || ||||| ||| Sbjct 1426 CATTAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCA 1485 Query 53828 TCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC-TTTCCA 53886 || ||||| | || |||| ||||||||| || ||| || || || || ||| Sbjct 1486 TCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCCA 1545 Query 53887 GACGACACGAGCCTTTATTATAGATTTGTATCTC----TTTTCTCTTTCGTATAGTGTAT 53942 | | | || | || | ||| | || | |||||| ||||||| ||||| Sbjct 1546 TAAATCTTGTGC---AAGAATTGTTTTTTTTCCCAAGATTTTCTTCTTCGTATTTTGTAT 1602 Query 53943 ACAA-TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA- 54000 | || | |||||| || || ||||| | || || |||||||| | || || Sbjct 1603 ATAATTTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCAC 1662 Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTC-GTTTCATAAAGAGATCAGGAATCCAAA 54059 ||| || | ||| | | ||||| |||| ||||||||| | |||||| | ||||| Sbjct 1663 CATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCAAA 1722 Query 54060 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 54119 ||| ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | Sbjct 1723 TAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTA 1782 Query 54120 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTT 54179 || | | |||||| |||||||| ||||| | |||| | || | || | || Sbjct 1783 AAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAG-CAAA-----AGAACTTT 1836 Query 54180 TGTT----TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 | || ||| || ||||||| ||||| || || | |||| ||||| Sbjct 1837 TCTTTTCCTCCACCTTGATCTACATATCTTGCTGTATAATTAAAAACT 1884 >seq3686 Length=1345 Score = 190 bits (210), Expect = 2e-43 Identities = 379/556 (68%), Gaps = 4/556 (1%) Strand=Plus/Plus Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| ||||| || || ||||||||||| ||||| || ||| || | || | Sbjct 619 AAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGT 678 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 679 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 738 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTT 24320 || || ||| || | || |||||| || || | | |||| |||||| || Sbjct 739 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTA 798 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 799 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 858 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | | || || ||| ||| ||| ||||||| || | |||||| |||| || || Sbjct 859 AATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGT 918 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||||| || |||||||| | || || | | || || | || ||||||||| Sbjct 919 ATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCT 978 Query 24501 ATACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 | ||||| | || ||||||||||| |||||||| ||||| ||||||||||| || Sbjct 979 CTTAAAAATT-TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1037 Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATAT 24618 | |||||||||||||||| |||||| | | ||| ||| ||| || || || | || Sbjct 1038 TAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1096 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 | | |||| ||| | |||||| | ||||||||||| ||||| || |||||||| | || Sbjct 1097 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAAT 1156 Query 24679 TCCAGATGTCATGATA 24694 |||| | ||| |||| Sbjct 1157 TCCATACTTCAGGATA 1172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593642263951200