Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq252 149 4e-31 >seq252 Length=6430 Score = 149 bits (164), Expect = 4e-31 Identities = 350/524 (67%), Gaps = 6/524 (1%) Strand=Plus/Plus Query 96997 AACTTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCAT-CAAT 97055 || || || || |||||||| ||| |||| | | ||| || | | ||| | ||| Sbjct 5003 AATTTAAGAGTAGGGAAAGGATAGGGTGTTCTATTTAACTGGACTTTTA-AGCTTTCAAC 5061 Query 97056 GTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATC 97115 ||||| ||||| ||||||| ||| || || |||||||| | || ||||| Sbjct 5062 ATGATTATTATAAACATGAGCATTTCCCAATACATGTATAAATTCAGCTGGTTGTAAATT 5121 Query 97116 AGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCC 97175 | || || || |||||| | || |||| ||||||| |||||| || || || || || Sbjct 5122 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACACC 5181 Query 97176 TAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATA 97235 || || | |||| ||||||||||| | ||| || | ||||||||| | ||||| Sbjct 5182 AAGACCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATA 5241 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 ||| |||| || | |||||| || || || ||||||| | |||| |||||||| Sbjct 5242 AAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCA 5301 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTT 97355 ||||| | | |||| |||| || || | | | || ||| || || | || Sbjct 5302 TGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATATTTTT 5361 Query 97356 TAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAA 97415 ||| |||||||| |||| | ||||| | | | || |||||| || ||||| Sbjct 5362 TAACTGATCAACACCTTTATCTTTATAATCAGCATGCATATCTGTATATTCAGCACCAAA 5421 Query 97416 ATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA--A 97473 ||||||||||| ||||| |||| || || | ||| ||||||||| | | || Sbjct 5422 GTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTAACTTCTCTATGAAATAATTT 5481 Query 97474 CCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 || | ||||||||| | || | ||||| || ||||| || Sbjct 5482 CCTA--TTATCTAAAAACTCTCTTGTCCCATTAGCTTCCCATAT 5523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346738819463300