Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq252 304 2e-77 seq4327 185 1e-41 >seq252 Length=6430 Score = 304 bits (336), Expect = 2e-77 Identities = 513/732 (70%), Gaps = 17/732 (2%) Strand=Plus/Plus Query 205368 TTTTAATCCATTAATATGATTAACATATATATGTGCATTACC-AATATTATGAATAAATT 205426 |||||| | | || ||||||| ||| | ||| ||||| || |||| ||| ||||||| Sbjct 5047 TTTTAAGCTTTCAACATGATTATTATAAACATGAGCATTTCCCAATAC-ATGTATAAATT 5105 Query 205427 CATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAA 205486 || ||||| ||||||| || ||||| |||||||| || |||| | ||| ||||| Sbjct 5106 CAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAA 5165 Query 205487 CATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGAT 205546 ||| ||||| ||||| | ||| | |||| |||||||||||||| ||||| | Sbjct 5166 TATTGAATGGAACACCAAGACCTAAATCACAAGATCTTTGATACATAATACATGATA--- 5222 Query 205547 ATTTATTATTAATTACATGAAATTGTACA-AAACAATGACAAGGTGGTATAACCATATTT 205605 |||| || || |||| |||||| ||| ||| ||||||||| |||| |||| | Sbjct 5223 ATTTTCCATCAAAAACATAAAATTG-ACATAAAATATGACAAGGAGGTAATGCCATTTGA 5281 Query 205606 TCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttatttttt 205665 || | |||| | |||||| || ||| || || |||| || || | ||||| Sbjct 5282 TCTAAATCTTTTACATTCCATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTA 5341 Query 205666 attttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATA 205725 ||| ||||||||||| | |||| ||||||| |||| || | |||||| | || |||| Sbjct 5342 ATTAAATTTATAATATTTTTTAACTGATCAACACCTTTATCTTTATAATCAGCATGCATA 5401 Query 205726 TCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 || |||||| ||||||||| || | ||||||||| || |||| ||||||||| ||| Sbjct 5402 TCTGTATATTCAGCACCAAAGTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTA 5461 Query 205786 TCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaa 205845 ||| ||||| | || | || | || | | | | || ||||| | |||| Sbjct 5462 ACTTCTCTATGAAATAATTTCCTATTATCTAAAAACTCTCTTGTCCCATTAGCTTCCC-- 5519 Query 205846 atatggattcctttattttttaGAA--TATTTGTATTAGTTGATCCAGATATAAACCATA 205903 |||| | | ||| ||| | | || ||||| ||| ||| ||| ||||||||||| Sbjct 5520 ATATTCTTACGTTTTTTTCTAATAATGTATTTCCATTTGTTTCTCCCCTTATAAACCATA 5579 Query 205904 ATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAAT 205963 || ||||||| || ||||| ||| | | ||||||||| ||||||||||| | | Sbjct 5580 GCAACTCTTCAATGATACCTCTTACAAATAATTTTTTTGTTGTTAATAATGGAAAATATT 5639 Query 205964 CATCTAATTTATATTTCATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTTCTAT 206023 || ||| ||| ||||||| | | ||| || | || | | | ||||||||||||| Sbjct 5640 CACTTAAATTAAATTTCATCATATATCCAAATTTACTTAATACACCAACACCTGTTCTAT 5699 Query 206024 --TTTTGGTTATTCTTCCATTAGATAATATTTCTGATATACCTTTTAAATATTGATATTC 206081 | ||| |||| |||||| || ||| || ||||| ||||||||||||||||| Sbjct 5700 CATCTTGTTTAT--TTCCATGCATTATTATATCATATATAATATTTAAATATTGATATTC 5757 Query 206082 ATCTGATGATGT 206093 | |||||||| Sbjct 5758 A--GGATGATGT 5767 >seq4327 Length=1153 Score = 185 bits (204), Expect = 1e-41 Identities = 169/211 (80%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 725 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 666 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| ||| ||||| || ||||| |||||||||||||| || || ||||||| Sbjct 665 TGATACAATTGAAAATGTTAAAGCA-AAAATCCAAGATAAAGAAGGAATTCCCCCTGATC 607 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | ||||| || |||||||||||||| ||| | |||||||| || |||| Sbjct 606 AACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTATA 547 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | ||||||||||| ||||| || |||||||| Sbjct 546 ACATTCAAAAAGAGTCAACCTTACATTTGGT 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755355052192000