Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3686 284 1e-71 seq8161 111 1e-19 seq3553 107 2e-18 >seq3686 Length=1345 Score = 284 bits (314), Expect = 1e-71 Identities = 627/919 (68%), Gaps = 37/919 (4%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT--T 15943 |||||||||| | | || |||||| || | |||||| | | | |||||| || | | Sbjct 264 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAAC--ACCTGAT 321 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || |||||||||||||||||||||||||||||||| ||| || || Sbjct 322 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 381 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAAC 16060 ||||| || ||| |||||||||||| | ||| ||| || || ||| || Sbjct 382 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAA- 440 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTAT 16119 ||||| ||| || |||||||| || || || ||| || || | |||||||| || Sbjct 441 --TAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAAT 497 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| | | ||| | | ||| | ||| | |||||| | ||| ||||| | | Sbjct 498 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 557 Query 16180 TATATCTCTTACTACACTATT----TAACGGAGGGTTTAATAAGTGTTTAAACATTATAC 16235 ||||| | || || || || ||| | | || ||| || | |||| || Sbjct 558 TATATTTTGAACAAC-CTCTTCTGGTAATTTATTTTCCAACAAGC---TATAAATTAAAC 613 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 || |||||| || |||||||| || ||||| || || || || |||||| | || Sbjct 614 AATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAAC 673 Query 16296 C-TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 | || ||| | | ||||||||| ||||||||| || ||| ||| ||| ||| Sbjct 674 CATGTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAAT 732 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG--TTC-TAtttttactt 16411 || ||||| || ||| || || | || ||| | | | ||| ||| || Sbjct 733 ATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---- 788 Query 16412 tctatccattttttagcccaatttgcttt-ttgtttAACACAGTTCATGTTCTCTATTGC 16470 ||||||||| ||||| |||||| || |||| | | | || || || || || Sbjct 789 --TATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGC 845 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 || |||||||| | | ||||| ||| ||||||| |||| |||| ||||||||| Sbjct 846 ATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATA 905 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 |||| || || ||||| || | ||||| |||||| ||||||| | | ||||| Sbjct 906 GGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAAT 965 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAG 16649 |||||||||||| ||||| || || ||||| ||||| ||||||||||| |||| Sbjct 966 TATTTGTACTTC-TCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAG 1024 Query 16650 CTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC-GTTATCTGAAAGTTTTAAC 16708 |||||||||| || || | ||||| ||||||| |||||| ||| | || |||| | Sbjct 1025 CTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCA- 1083 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 |||| ||||| |||||||||| | ||||| |||||||||| || || |||| Sbjct 1084 AAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCT 1143 Query 16769 TTTTTATACATTTTCCATA 16787 |||||||| | ||||||| Sbjct 1144 TTTTTATAAAAATTCCATA 1162 >seq8161 Length=638 Score = 111 bits (122), Expect = 1e-19 Identities = 174/243 (72%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT--T 15943 |||||||||| | | || |||||| || | |||||| | | | |||||| || | | Sbjct 541 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAAC--ACCTGAT 484 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || |||||||||||||||||||||||||||||||| ||| || || Sbjct 483 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 424 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCA---ATTCCAAC 16060 ||||| || ||| |||||||||||| | ||| ||| || | |||| Sbjct 423 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTC---T 367 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC-ACAGTTCATTCCTAT 16119 ||||||| ||| || |||||||| || || || || ||| || | |||||||| || Sbjct 366 AATAATCGATCAGCAACAAATTCAATGTATTGAGACA-TAAGTCTTGAATTCATTCCAAT 308 Query 16120 TAA 16122 ||| Sbjct 307 TAA 305 >seq3553 Length=1395 Score = 107 bits (118), Expect = 2e-18 Identities = 153/212 (72%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT--T 15943 |||||||||| | | || |||||| || | |||||| | | | |||||| || | | Sbjct 1175 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAAC--ACCTGAT 1232 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || |||||||||||||||||||||||||||||||| ||| || || Sbjct 1233 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 1292 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCA---ATTCCAAC 16060 ||||| || ||| |||||||||||| | ||| ||| || | |||| Sbjct 1293 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTC---T 1349 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTG 16092 ||||||| ||| || |||||||| || || || Sbjct 1350 AATAATCGATCAGCAACAAATTCAATGTATTG 1381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462450196834000