Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq252 206 2e-48 >seq252 Length=6430 Score = 206 bits (228), Expect = 2e-48 Identities = 318/451 (71%), Gaps = 2/451 (0%) Strand=Plus/Minus Query 20221 GATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATG 20280 || || ||||| | || |||||||||||||| || ||||| ||||||||| || ||| Sbjct 5457 GACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGATATG 5398 Query 20281 AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAA 20340 | | ||||| | |||| || ||||| ||| ||||| |||| |||||||||||| Sbjct 5397 CATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATTTAATTAAA 5338 Query 20341 A-CGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTT 20399 | ||| || | | | ||| ||||||||||||| || ||||| | |||||| | | Sbjct 5337 AACGATCCGACATGT-AGACGAATTATTTTATGTGCATGGAATGTAAAAGATTTAGATCA 5279 Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459 |||||| || ||||| |||||||| |||| |||||||| ||| | || |||| || Sbjct 5278 AATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTATC 5219 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||| ||||||||| |||| |||| | || || |||||||| ||||||||||| Sbjct 5218 ATGTATTATGTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAATATTGCTTC 5159 Query 20520 TTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGT 20579 ||| | | |||| |||||||| ||||| || ||||| || | | ||| || | Sbjct 5158 CTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTGAATTTAT 5099 Query 20580 CCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTT 20639 || | ||| | || ||| |||| ||||||| | ||| |||||| | ||||| Sbjct 5098 ACATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGCTTAAAAGTCCAGTT 5039 Query 20640 AACACGACAACCAAAACAATTCCCAACTCTT 20670 || || ||| | | ||||| |||||| Sbjct 5038 AAATAGAACACCCTATCCTTTCCCTACTCTT 5008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399131992562050