Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3686 232 6e-56 seq8161 105 6e-18 seq3553 100 3e-16 >seq3686 Length=1345 Score = 232 bits (256), Expect = 6e-56 Identities = 623/934 (67%), Gaps = 29/934 (3%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 265 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 324 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 325 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 384 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 14032 || || |||||||||| |||| || ||||| ||||||| |||||||| Sbjct 385 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATA-- 442 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 14091 ||| ||| |||| || ||||| ||||||||||| || || ||||||| || |||| Sbjct 443 -ATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 500 Query 14092 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | ||| | | ||| || |||| | |||||| || || || || | | Sbjct 501 ATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 559 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACG 14207 || | || || || | | | | |||||| | | | | | |||||||||| Sbjct 560 TATTTTGAACAACCTCTTCTG--GTAATTTATTTTCCAACAAGCT-ATAAATTAAACAAT 616 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 14266 |||||| || | || |||||||||||||| | ||| || ||||||||| || | Sbjct 617 TAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCAT 676 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 | || || | ||||||| ||||||||||||||| || ||| ||| |||||| Sbjct 677 GTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATT 735 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 || || || ||| |||| | || ||| |||| || | | || |||| Sbjct 736 CCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TATC 792 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 ||||| |||||| | ||| ||||| || || |||||||||||| |||| Sbjct 793 CATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAAT 852 Query 14447 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 |||| | ||||||| | ||| || ||||||| | ||| ||||| ||||| Sbjct 853 AAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCA 912 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 |||||||| ||||| | |||||| |||||| ||||||| | | ||||| |||| Sbjct 913 GAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGT 972 Query 14567 ACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14626 || ||| ||||| | || |||||||| ||||| |||||||||||||||||| Sbjct 973 ACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAA 1032 Query 14627 AATGCCA--ATATGTTTTTAATAAAGTATTGC-TCTTCATTGCTGAGTTTTTTCCAA-TC 14682 ||||| | | ||||||| | || || || | | | |||| | | |||||| || || Sbjct 1033 AATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATT--TAA--TTTTTCAAAGTC 1088 Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742 ||||| | || | ||||| ||| ||| | |||||||| || |||||||||| Sbjct 1089 TTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTT 1148 Query 14743 ATACATTACCCATATTTCTTTATATAATATAGGA 14776 ||| | ||||| ||| ||| | |||||| Sbjct 1149 ATAAAAATTCCATACTTCAGGATACATAATAGGA 1182 >seq8161 Length=638 Score = 105 bits (116), Expect = 6e-18 Identities = 169/239 (71%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 540 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 481 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 480 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 421 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 14032 || || |||||||||| |||| || ||||| ||||||| |||||||| Sbjct 420 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATA-- 363 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTA 14090 ||| ||| |||| || ||||| |||||||||| ||| || ||||||| || |||| Sbjct 362 -ATCGATCAGCAACAAATTCAATGTATTGAGACA-TAAGTCTTGAATTCATTCCAATTA 306 >seq3553 Length=1395 Score = 100 bits (110), Expect = 3e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1176 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1235 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 1236 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 1295 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTA---GTTCTAATAGT 14032 || || |||||||||| |||| || ||||| ||||||| |||||| | Sbjct 1296 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAA---T 1352 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACAT 14067 |||| ||| |||| || ||||| ||||||||||| Sbjct 1353 AATCGATCAGCAACAAATTCAATGTATTGAGACAT 1387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482281146569200