Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq6062 91.5 2e-13 seq3964 91.5 2e-13 >seq6062 Length=850 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 73930 ATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCTC 73989 |||| ||||| || | | ||||||||||| |||||||| ||||| ||| || Sbjct 116 ATGGTGATATTGTATTATTTAATAGACAACCATCTTTACATCGTATGTCAATTATGTGTC 175 Query 73990 TTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTTAATCT---TGCATGCACTAAAC 74046 | || | | |||||||| ||||| ||| |||||| || ||| | | | Sbjct 176 ATAAAGCTCGAGTTATGGATTATAAAACATTTCGCTTTAATGAATGTGTATGTAGT---C 232 Query 74047 CATATAATGCAGATTTTGATGGAGATGAAATGAATGCTCATGCGCCTCAATCAGAAGAAA 74106 |||||||||||||||||||||| |||||||||||| |||| |||||| | |||||| Sbjct 233 CATATAATGCAGATTTTGATGGGGATGAAATGAATTTACATGTACCTCAAACCGAAGAAT 292 Query 74107 GTAAAGCTGA 74116 || ||| || Sbjct 293 CTAGAGCAGA 302 >seq3964 Length=1254 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 73930 ATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCTC 73989 |||| ||||| || | | ||||||||||| |||||||| ||||| ||| || Sbjct 898 ATGGTGATATTGTATTATTTAATAGACAACCATCTTTACATCGTATGTCAATTATGTGTC 839 Query 73990 TTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTTAATCT---TGCATGCACTAAAC 74046 | || | | |||||||| ||||| ||| |||||| || ||| | | | Sbjct 838 ATAAAGCTCGAGTTATGGATTATAAAACATTTCGCTTTAATGAATGTGTATGTAGT---C 782 Query 74047 CATATAATGCAGATTTTGATGGAGATGAAATGAATGCTCATGCGCCTCAATCAGAAGAAA 74106 |||||||||||||||||||||| |||||||||||| |||| |||||| | |||||| Sbjct 781 CATATAATGCAGATTTTGATGGGGATGAAATGAATTTACATGTACCTCAAACCGAAGAAT 722 Query 74107 GTAAAGCTGA 74116 || ||| || Sbjct 721 CTAGAGCAGA 712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679723559800800