Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq4327 123 2e-23 >seq4327 Length=1153 Score = 123 bits (136), Expect = 2e-23 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||||| |||||||||||||| ||||| | | |||| | | |||||| Sbjct 515 TACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTC 574 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||||| || || | || | |||||||||||| ||| | ||||| ||||| Sbjct 575 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 634 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| |||| || || | | ||| || ||| || || |||| ||||| ||| Sbjct 635 GATTT-TTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 693 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTT--TAAAC 18333 | ||||| |||||||||||||| ||||||||||| ||||| Sbjct 694 TTCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAAC 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379294577404050