Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4327 86.0 6e-12 >seq4327 Length=1153 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| || ||||| || | || || ||||| ||||| | || |||||||| Sbjct 727 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 668 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || ||| | ||| || || ||||| | || || || Sbjct 667 TCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 608 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTA 31368 || || | |||| |||||||| ||||| || ||||| | | || || | | || || Sbjct 607 CAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGA-TGGAAGAACATTATCTGACTA 549 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 ||||||||||||||| || || | ||| ||||| Sbjct 548 TAACATTCAAAAAGAGTCAACCTTACATTTGGTA 515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445706834464800