Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2587 214 2e-50 seq3686 178 2e-39 >seq2587 Length=1884 Score = 214 bits (236), Expect = 2e-50 Identities = 694/1066 (65%), Gaps = 38/1066 (4%) Strand=Plus/Plus Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | ||||| Sbjct 832 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 891 Query 62481 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62540 || || ||||||||||| | | | | |||||| | |||| | | || ||||| | | Sbjct 892 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 951 Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAA---CANNNNNNNNNNNATATTGT 62597 |||| ||||||| |||| | ||| || | ||||| Sbjct 952 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 1011 Query 62598 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCC--TTCCTTCTCA 62654 | || || | || || | || | ||| ||||| ||||||||||| || ||| | Sbjct 1012 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 1068 Query 62655 GCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGAT-CTTCTTATT 62713 || | || | | | ||||| ||| | ||||| || |||||||| || ||||| ||| Sbjct 1069 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 1127 Query 62714 TAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62773 || |||| ||||| ||| ||||||| |||| || ||||| | || ||||| Sbjct 1128 TAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 1187 Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833 |||||| || || || || |||||||||||||| ||||| || |||| |||||| || Sbjct 1188 TCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAAC 1247 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62893 ||||||||||| | || |||||||||| | |||||| ||| | ||| | ||| Sbjct 1248 TGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 1307 Query 62894 CTTCAGTTTGAGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAATGCAAC 62947 | | ||| ||||| ||| | ||||| ||||| || ||||||| Sbjct 1308 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAAT 1367 Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 || || | |||||| || ||||| |||| || | ||||| || || ||| || Sbjct 1368 GGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACA 1427 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 |||||| || || || ||||||||||||| |||||| || ||||| ||||| Sbjct 1428 TTAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATC 1487 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC-TTTCCAGA 63126 ||||| | || |||| ||||||||| || || || || || || ||| | Sbjct 1488 TTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCCATA 1547 Query 63127 CGACTCGAGCCTTTATTATAGATTTGTATCTC----CTTTCTCTTTCGTATAGAGTATAC 63182 || | || | || | ||| | || | ||||| ||||||| ||||| Sbjct 1548 AATCTTGTGC---AAGAATTGTTTTTTTTCCCAAGATTTTCTTCTTCGTATTTTGTATAT 1604 Query 63183 AA-TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA-CA 63240 || | ||| || || || ||||| | || | |||||||| | || || || Sbjct 1605 AATTTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACCA 1664 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTC-GTTTCATAAAGAGATCAGGAATCCAAAGA 63299 | || | ||| | | ||||| |||| ||||||||| | |||||| | ||||| | Sbjct 1665 TTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCAAATA 1724 Query 63300 GCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 || ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | Sbjct 1725 GCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAA 1784 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 || | | |||||| |||||||| ||||| | |||| || | || | ||| Sbjct 1785 AATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAA------AAGAACTTTTC 1838 Query 63420 TT----TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 || ||| || ||||||| ||||| || || | |||| ||||| Sbjct 1839 TTTTCCTCCACCTTGATCTACATATCTTGCTGTATAATTAAAAACT 1884 >seq3686 Length=1345 Score = 178 bits (196), Expect = 2e-39 Identities = 367/541 (68%), Gaps = 4/541 (1%) Strand=Plus/Plus Query 33603 CCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 33662 || || ||||||||||| ||||| ||| ||| || | || | | | | ||| Sbjct 634 CCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTTTGTTTT 693 Query 33663 TTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33722 |||| ||||||||| | | || ||| ||| || |||||||| || ||| Sbjct 694 TTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCATTA 753 Query 33723 GCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33782 || | || ||| || || || | | |||| |||||| || ||||| || Sbjct 754 GCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATAATGCT 813 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 33842 || ||||||| || || |||| || |||| ||| | || | | || || | Sbjct 814 TTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCA 873 Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || ||| |||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 874 TCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCT 933 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || ||||| | || || | | || || | || || |||||| | ||||| | || Sbjct 934 ATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATT-TACT 992 Query 33963 -GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 ||||||||||| |||||||||||||| ||||||||||| || | ||||||||||| Sbjct 993 AGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTAT 1052 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATCCA 34080 ||||| |||||| | | ||| ||| ||| || || || | ||| | |||| ||| | Sbjct 1053 AAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTA 1111 Query 34081 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 34140 |||||| | ||||||||||| ||||| || |||||||| | |||||| | ||| ||| Sbjct 1112 TTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCAGGAT 1171 Query 34141 A 34141 | Sbjct 1172 A 1172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629733440623200