Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2587 412 3e-110 seq3686 288 9e-73 seq9906 167 2e-36 >seq2587 Length=1884 Score = 412 bits (456), Expect = 3e-110 Identities = 839/1218 (69%), Gaps = 45/1218 (4%) Strand=Plus/Plus Query 36958 TCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGT 37017 || || ||||| || | |||| |||||| || |||||||| |||||||| | | | Sbjct 616 TCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCCCAAACGGTTTTATACAACTCT 675 Query 37018 TTTATATTATCTGGTAAATC--TAA-ATGTTGAATAGAACCATTATGTAACAC-AATTGT 37073 || | | | |||| || ||| || ||||| | |||||||| | |||||| Sbjct 676 TTCAAGTCACTAGGTATTTCGCTAATATATTGAACACTTCCATTATGGGCAATTAATTGT 735 Query 37074 ATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATT 37133 | || || || | || ||| | | |||| | || ||| | || | || ||||| Sbjct 736 TGT-TTCATATCTTCATCCCAAAGACCTCTATCAAAAAGATCTTTTAACAAATGAGGATT 794 Query 37134 TACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTC 37193 ||||| || || ||| ||| || | ||| ||| || || || ||||||||||| Sbjct 795 AACAACAAAGAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGTATATGGTTC 854 Query 37194 AATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253 || ||| |||||||| | ||| ||||| || || || || || ||||| ||||||| || Sbjct 855 AAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAAGCTGTTGGCATAGGTGCTAAAAG 914 Query 37254 AAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313 ||| |||||| ||||| ||| || | ||| | ||||||| | || ||||||||| | Sbjct 915 AAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTTTTTAATAAATCCCAATCCCA-AT 973 Query 37314 ATCTGTTGGGTTCTTT----AACCACATATCATATTGTAGAATACCTTTACTCGCTGGAG 37369 || | || | |||| |||||||||| |||||| || |||| || |||||| Sbjct 974 ATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGGCTTGCTGGAC 1033 Query 37370 AATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGA---TTCTA 37426 | | | ||||| ||||| ||||| | || || | || |||| ||| ||||| Sbjct 1034 TACCTTGATATGATTCATATGGTCCACTTACTTGTGCCAATT--CAAC-AGACATTTCTA 1090 Query 37427 GTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTAT 37486 || |||||||| || ||||| || ||| | |||||||| ||| |||||||| | Sbjct 1091 AAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAGCTTCTTCAGATT 1150 Query 37487 CGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGG 37546 | ||| ||| | || | ||||| ||| || || || || || || || || || | Sbjct 1151 CATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAG 1210 Query 37547 GTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTA 37606 |||||||| | ||||| ||||| || |||| | |||||||||||||| | || || | Sbjct 1211 GTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATTTCTTTCAATAA 1270 Query 37607 TTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCT-CAACTTGTCGAACATAAAT 37665 |||||| || |||| || | ||||| |||| ||| | || || | || ||||| Sbjct 1271 TTTTATCTAAATTTCTAGTAATAATTTTAGTAA-TATCATATAATTTTTTAAAATTAAAT 1329 Query 37666 ACGTTAT------TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 | || | ||| ||||||||| | || | ||| || ||| |||||| ||||| Sbjct 1330 TCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAATTACAAACAGCT 1389 Query 37720 ACTTCATCTTCGTTA-CTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGT 37778 |||||||| || | || ||| ||||| || ||| |||||| || ||||||| Sbjct 1390 ACTTCATC-AGGTGATGTATATTCAATAATTTCACAACATTAATTACTGCATTTAATTGT 1448 Query 37779 TCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGT 37838 ||| ||||| ||||||| ||||| |||||| | ||||||||||| ||||| || Sbjct 1449 TCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAACATATATGGTAC 1508 Query 37839 TCCTTGTTCTATTTGAGCCTCG-ATAATAG-ATTTCCATAAACTTCTTGCTTTAACGATC 37896 || ||||||||| || | | | |||| | ||||||| ||||| | || || Sbjct 1509 ACCAGTTTCTATTTG-GCTTTGTAATATAGCAAACCCATAAA--TCTTG-TGCAAGAATT 1564 Query 37897 GCTTTAAtt------tttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTC 37950 | ||| || ||||||| |||||||| | |||||||||| || |||| ||| Sbjct 1565 GTTTTTTTTCCCAAGATTTTCTT--CTTCGTATTTTGTATATAATTTTTTCAAATTCTTC 1622 Query 37951 -CCCCATACATCGCATAATCCTGGACATTCGCATGGACA-CATTAGAGACCA-TTCTTCA 38007 ||||| || | ||| |||||||||||| || || ||||| || ||| ||||| | Sbjct 1623 ACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACCATTAAAGTCCAGTTCTT-A 1681 Query 38008 TCTTTTTCTACGC-GTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTT 38066 | || | ||| | || ||||||||||||||||||||| | ||| ||||||||| Sbjct 1682 TTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACG 1741 Query 38067 GGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGC 38126 | ||| ||||||| || || ||| |||||||| || ||| || || ||||| | Sbjct 1742 AGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGA 1801 Query 38127 GTGCCATGGTTCTATATA 38144 ||||||||||| | ||| Sbjct 1802 ATGCCATGGTTCAACATA 1819 >seq3686 Length=1345 Score = 288 bits (318), Expect = 9e-73 Identities = 592/867 (68%), Gaps = 14/867 (2%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || ||||| ||| || ||||| || || |||| || ||||| | Sbjct 322 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 381 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||||| ||||| | | || ||| ||||| |||||||| | |||| Sbjct 382 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAAT 441 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||| ||| || || ||||| || || |||||||| | | ||||||| || || | | Sbjct 442 AATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAATTAAA 501 Query 11519 TCCACCGGAATAGCAACTGTCAAA-AACTCCT-TTTCTATATTAACCGCATCAATGATTA 11576 || || | || | | |||| || | | |||||| | ||| || || | | || Sbjct 502 TCACAAGGTAAAG--ATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 559 Query 11577 TCGACGTT--ATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGC 11634 | | || | ||| || | | | | || | || || | |||||||| Sbjct 560 T--ATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAACAAGCTATAAATTAAACAATT 617 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||| ||||| ||||| |||||||| || | ||||||| ||||||||| || | Sbjct 618 AAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATG 677 Query 11695 CA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 | | || | ||||||| | ||||||||| ||| ||| ||| ||| ||||||| Sbjct 678 TAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTC 736 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATT 11813 | || ||| |||| ||||| | |||||| || | || | | |||||||| Sbjct 737 CTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATT 796 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 | ||||| ||||| ||||||| | || |||| ||||| | |||||||| Sbjct 797 TAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAAT 856 Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933 | | | ||| | | ||| || | ||| |||| |||||||||||||| |||| || | Sbjct 857 TTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGT 916 Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT-GTACA 11992 | |||||||| | |||||||||||| |||| |||| | || || | | | |||| Sbjct 917 GTATATTTTCAACAGCTATTTGAAAAGCATA-AAACTTTTTGGCTTCAATTATTTGTACT 975 Query 11993 TCCACATAAAATCTTTCC-GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAA 12051 || | ||||| || | |||||||| || ||| || |||||||||| ||||||||| Sbjct 976 TCT-CTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAA 1034 Query 12052 TGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAA 12111 |||||| | |||||||||||| | |||||| | | | ||||||| || | || | || Sbjct 1035 TGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAA 1094 Query 12112 ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACAT 12171 ||| |||||||||||| ||||||| | |||||||| ||| | | || |||||| | Sbjct 1095 ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAA 1154 Query 12172 TTTCCAGATATCATGATACTTAATAGG 12198 ||||| | ||| ||||| ||||||| Sbjct 1155 ATTCCATACTTCAGGATACATAATAGG 1181 >seq9906 Length=546 Score = 167 bits (184), Expect = 2e-36 Identities = 313/453 (69%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276 ||| || |||| |||||| ||| | || || | || || |||| | | ||||| Sbjct 546 CATCGGGACTAAACCATTTGATATACCATTAGTTCCTCTGATGTAAGAATTTTGAGCTCT 487 Query 38277 TATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAA-GCGCATTGTT 38335 |||| || | || ||||| || ||||| |||||| || | || || ||||| | Sbjct 486 AATATCTTGTACAGCCACACCTATACCTCCTGC-TGTTTTACTAATCAATGCACATTGCT 428 Query 38336 TTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAG 38395 |||| || ||||||||||||||||| ||| || |||| || || ||| || || Sbjct 427 TTAATGTTTCAAATATACCTTCTATTGAATCAGATTTCATTGATAATAAAAAGCATGAAG 368 Query 38396 ACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATT 38455 ||||||| || ||| ||||| | |||||||||||||||| ||||| | || ||| Sbjct 367 ACATTTGGGGTCTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATT 308 Query 38456 TTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTA 38515 ||| |||| ||| ||| ||||||| | | || | |||| | || || |||| Sbjct 307 TTTGTGACATTAAATGATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTA 248 Query 38516 GAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATT-CTGTTTAAGT 38574 |||||| ||||||| | ||| || || | ||| || ||||||||||| | ||| | Sbjct 247 TAGATACTCTCATTAATAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAA-T 189 Query 38575 AGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGT 38632 | || || ||||||||||||| | |||||||||| ||| ||| ||||||| | Sbjct 188 AAGTAAGACCTTTCTAATGTTTTAAATCCAAAATAATCATAATTGA--AATCTCTTGTAT 131 Query 38633 ATGCTATTACATTATCGATTATATCTCTATGTT 38665 | ||||| | |||| | |||| |||||| Sbjct 130 AATCTATTTCTTTATTTAAACGATCTTTATGTT 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468462193373600