Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2587 228 1e-54 seq3686 190 3e-43 >seq2587 Length=1884 Score = 228 bits (252), Expect = 1e-54 Identities = 699/1068 (65%), Gaps = 42/1068 (4%) Strand=Plus/Plus Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | ||||| Sbjct 832 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 891 Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 65333 || || ||||||||||| | | | | |||||| | |||| | | || ||||| | | Sbjct 892 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 951 Query 65334 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 65390 |||| ||||||| |||| | ||| | |||| Sbjct 952 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 1011 Query 65391 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 65447 | || || | || || | || | ||| ||||| || |||||||| || ||| | Sbjct 1012 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 1068 Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 65506 || | |||| | | ||||| ||| | ||||| || ||||| || || ||||| ||| Sbjct 1069 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 1127 Query 65507 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 1128 TAATTCTTTAGCTTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 1185 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 |||||||| || || || || |||||||||||||| ||||| || |||| |||||| | Sbjct 1186 AATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTA 1245 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | ||||||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 1246 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 1305 Query 65685 TCCTTCAGTTTGAGAAAATCAAA-----TCGCTCATCTAT-TACAAACATGTTCAATGCA 65738 || | | ||| ||||| ||| | | ||||| ||||| || |||||| Sbjct 1306 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA 1365 Query 65739 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 65798 | || || | ||||||||| ||||| |||| || | ||||| || || ||| Sbjct 1366 ATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 1425 Query 65799 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 65858 || |||||| || || || ||||||||||||| |||||| || ||||| ||| Sbjct 1426 CATTAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCA 1485 Query 65859 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC-TTTCCA 65917 || ||||| | || |||| ||||||||| || || || || || || ||| Sbjct 1486 TCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCCA 1545 Query 65918 GACGACTCGAGCCTTTATTATAGATTTGTATCTC----TTTTCTCTTTCGTATAGTGTAT 65973 | || | || | || | ||| | || | |||||| ||||||| ||||| Sbjct 1546 TAAATCTTGTGC---AAGAATTGTTTTTTTTCCCAAGATTTTCTTCTTCGTATTTTGTAT 1602 Query 65974 ACAA-TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA- 66031 | || | ||| || || || ||||| | || || |||||||| | || || Sbjct 1603 ATAATTTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCAC 1662 Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTC-GTTTCATAAAGAGATCAGGAATCCAAA 66090 ||| || | ||| | | ||||| |||| ||||||||| | |||||| | ||||| Sbjct 1663 CATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCAAA 1722 Query 66091 GAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 66150 ||| ||||||||| | | ||| ||| || || || ||| ||| | | ||| | Sbjct 1723 TAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTA 1782 Query 66151 GGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 66210 || | | |||||| ||||||| ||||| | |||| || | || | || Sbjct 1783 AAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAA------AAGAACTTT 1836 Query 66211 TGTT----TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 66254 | || ||| || ||||||| ||||| || || | |||| ||||| Sbjct 1837 TCTTTTCCTCCACCTTGATCTACATATCTTGCTGTATAATTAAAAACT 1884 >seq3686 Length=1345 Score = 190 bits (210), Expect = 3e-43 Identities = 379/556 (68%), Gaps = 4/556 (1%) Strand=Plus/Plus Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| ||||| || || ||||||||||| ||||| || ||| || | || | Sbjct 619 AAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGT 678 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 36283 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 679 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 738 Query 36284 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTT 36343 || || ||| || | || ||| || || || | | |||| |||||| || Sbjct 739 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTA 798 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 36403 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 799 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 858 Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463 | | || || ||| ||| ||| ||||||| || | |||||| |||| || || Sbjct 859 AATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGT 918 Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||||| || |||||||| | || || | | || || | || ||||||||| Sbjct 919 ATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCT 978 Query 36524 GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | ||||| | || ||||||||||| |||||||| ||||| ||||||||||| || Sbjct 979 CTTAAAAATT-TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1037 Query 36583 CAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA-TCATTGATAT 36641 | |||||||||||||||| |||||| ||| ||| ||| ||| || || || | || Sbjct 1038 TAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1096 Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 | | |||| ||| | |||||| | ||||||||||| ||||| || |||||||| | || Sbjct 1097 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAAT 1156 Query 36702 TCCAGATGTCATGATA 36717 |||| | ||| |||| Sbjct 1157 TCCATACTTCAGGATA 1172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658084851659600