Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2587 300 2e-76 seq3686 187 4e-42 >seq2587 Length=1884 Score = 300 bits (332), Expect = 2e-76 Identities = 717/1063 (67%), Gaps = 32/1063 (3%) Strand=Plus/Plus Query 79093 TAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGAT 79152 ||||| ||||| ||||||||||| | |||||||||||||| |||||||| | ||||| Sbjct 832 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 891 Query 79153 GCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCT 79212 || |||||||||||||| | | | | |||||| | |||| | || ||||| | | Sbjct 892 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 951 Query 79213 TTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAA---CATTCCAAAGATCATATTGT 79269 |||| | |||||||||||| | | || ||||||| | |||| ||||| Sbjct 952 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 1011 Query 79270 AGAATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCC--TTCCTTTTCG 79326 | || || | || || | | | | || |||| |||||| ||||| || ||| | Sbjct 1012 AATATTCCTTGGCTTGCTGGACTACCTTGA-TATGATTCATATGGTCCACTTACTTGT-- 1068 Query 79327 GCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAAT-CTTCTTATT 79385 || |||||| | | ||||| || | ||||| || ||||| || || ||||| ||| Sbjct 1069 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 1127 Query 79386 GAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 79445 | |||| |||||| ||| ||||||| |||| || ||||| | |||||||| Sbjct 1128 TAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 1187 Query 79446 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAAT 79505 |||||| || || || || |||||||||||||| ||||| || |||| |||||| || Sbjct 1188 TCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAAC 1247 Query 79506 AGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGA-CCACAT 79564 ||||||||||| | || |||||||||| | ||| || | || || ||| | | || Sbjct 1248 TGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATAT 1306 Query 79565 CCTTTAGTTTGAGAAAATCAAA-----TCGTCCATCTAT-TACAAACATGTTCAACGCGA 79618 | | || ||| ||||| ||| | | ||||| ||||| || || || | Sbjct 1307 CATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAA 1366 Query 79619 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGC 79678 || || | ||||||||| ||||| |||| || | ||||| || |||||| | Sbjct 1367 TGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAAC 1426 Query 79679 AGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 79738 | ||||| || ||||| ||||||||||||| |||||| || ||||| |||| Sbjct 1427 ATTAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCAT 1486 Query 79739 CCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC-TTTCCAG 79797 | ||||| | || | || ||||||||| || || || || || || ||| Sbjct 1487 CTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCCAT 1546 Query 79798 ACGACTCGAGCCTTTATTATAGACTTGTATCTC----TTTTCTCTTTCGTATTGTGTATA 79853 | || | || | || | || | || | |||||| |||||||| |||||| Sbjct 1547 AAATCTTGTGC---AAGAATTGTTTTTTTTCCCAAGATTTTCTTCTTCGTATTTTGTATA 1603 Query 79854 TAA-TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACA-C 79911 ||| | ||| || || || ||||| || ||| || |||||||||| ||| || | Sbjct 1604 TAATTTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACC 1663 Query 79912 ATCAACGACCACTCTCCATCATCCTTTACTC-GTTTCATAAAGAGATCAGGAATCCAAAG 79970 || || | ||| | || |||||||||| ||||||||| | |||||| | ||||| Sbjct 1664 ATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCAAAT 1723 Query 79971 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 80030 ||| ||||| ||| | | ||| || || || || ||| ||| | | ||| | Sbjct 1724 AGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAA 1783 Query 80031 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTT 80090 || | | |||||| |||||||| ||||| | |||| | || || | || ||| Sbjct 1784 AAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAG-CAAAAGAACTTTTC-TTT 1841 Query 80091 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 ||| || ||||||| ||||| || || | |||| ||||| Sbjct 1842 TCCTCCACCTTGATCTACATATCTTGCTGTATAATTAAAAACT 1884 >seq3686 Length=1345 Score = 187 bits (206), Expect = 4e-42 Identities = 336/485 (69%), Gaps = 6/485 (1%) Strand=Plus/Plus Query 50038 TTTTTAAGCCAAAATATGGACGCAAATGAC--CCAGAAAAGAAGATTCCTTCTACTGCGG 50095 ||||||| ||||||||| | | |||| || ||| ||| || |||||||| || | Sbjct 691 TTTTTAAACCAAAATATTG-CACAAAA-ACTTCCACTAAATAATATTCCTTCGACACATG 748 Query 50096 CAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAAT 50155 || || |||| ||| || || || | | |||| |||||| || ||||| Sbjct 749 CATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATA 808 Query 50156 CGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCAT 50215 || || ||||||| || || |||| || |||| ||| | || | | || | Sbjct 809 ATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTT 868 Query 50216 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 50275 | ||| ||| |||| |||| || || | |||||| |||| || || || ||||||| Sbjct 869 TCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAA 928 Query 50276 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATC 50335 || || ||||| | || || | | || || | || || |||||| | ||||| Sbjct 929 CAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATT 988 Query 50336 GTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 50395 |||||||||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 989 TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTT 1048 Query 50396 TTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATA 50454 |||||||||||||||| || ||| ||| ||| || || || | ||| | |||| | Sbjct 1049 TTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAA 1107 Query 50455 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 50514 |||| |||||| | ||||||||||| ||||| || |||||||| | |||||| | ||| Sbjct 1108 TCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCA 1167 Query 50515 TGATA 50519 |||| Sbjct 1168 GGATA 1172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718172821331600