Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3686 255 6e-63 seq8161 114 1e-20 seq3553 109 5e-19 >seq3686 Length=1345 Score = 255 bits (282), Expect = 6e-63 Identities = 628/934 (67%), Gaps = 29/934 (3%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 265 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 324 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 325 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 384 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 13700 || || |||||||||| |||| || ||||| ||||||| |||||||| Sbjct 385 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATA-- 442 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 13759 ||| |||||||| ||| ||||| ||||||||||| || || ||||||| || |||| Sbjct 443 -ATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 500 Query 13760 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||| | | ||| || |||| | |||||| || || ||||| | | Sbjct 501 ATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 559 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACG 13875 || || || || ||| | | | | |||||| | | | | | |||||||||| Sbjct 560 TATTTTGAACAACCTCTTCTG--GTAATTTATTTTCCAACAAGCT-ATAAATTAAACAAT 616 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 13934 |||||| || | || |||||||||||||| | ||| || ||||||||| || | Sbjct 617 TAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCAT 676 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 | || || | ||||||| ||||||||||||||| ||| || ||| |||||| Sbjct 677 GTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATT 735 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 || || || ||| |||| | || ||| |||| || | | || |||| Sbjct 736 CCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TATC 792 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 ||||| |||||| | ||| ||||| || || |||||||||||| |||| Sbjct 793 CATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAAT 852 Query 14115 AAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 |||| | ||||||| | ||| || ||||||| | ||| ||||| ||||| Sbjct 853 AAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCA 912 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 |||||||| ||||| | |||||| |||||| ||||||| | | ||||| |||| Sbjct 913 GAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGT 972 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 ||||| ||||| | || |||||||| ||||| |||||||||||||||||| Sbjct 973 ACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAA 1032 Query 14295 AATGCCA--ATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAA-TC 14350 ||||| | | ||||||| ||||| | || || || | || | |||||| || || Sbjct 1033 AATGCTAGCACATGTTTT--ATAAAATGTTTTTCATTTACATTTAA--TTTTTCAAAGTC 1088 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 ||||| | || | ||||| ||| ||| | |||||||| || |||||||||| Sbjct 1089 TTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTT 1148 Query 14411 ATACATTACCCATATTTCTTTATATAATATAGGA 14444 ||| | ||||| ||| ||| | |||||| Sbjct 1149 ATAAAAATTCCATACTTCAGGATACATAATAGGA 1182 >seq8161 Length=638 Score = 114 bits (126), Expect = 1e-20 Identities = 171/239 (72%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 540 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 481 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 480 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 421 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 13700 || || |||||||||| |||| || ||||| ||||||| |||||||| Sbjct 420 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATA-- 363 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTA 13758 ||| |||||||| ||| ||||| |||||||||| ||| || ||||||| || |||| Sbjct 362 -ATCGATCAGCAACAAATTCAATGTATTGAGACA-TAAGTCTTGAATTCATTCCAATTA 306 >seq3553 Length=1395 Score = 109 bits (120), Expect = 5e-19 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1176 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1235 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 1236 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 1295 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTA---GTTCTAATAGT 13700 || || |||||||||| |||| || ||||| ||||||| |||||| | Sbjct 1296 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAA---T 1352 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACAT 13735 |||| |||||||| ||| ||||| ||||||||||| Sbjct 1353 AATCGATCAGCAACAAATTCAATGTATTGAGACAT 1387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479663896346000