Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3686 221 1e-52 seq8161 107 2e-18 seq3553 104 2e-17 >seq3686 Length=1345 Score = 221 bits (244), Expect = 1e-52 Identities = 621/932 (67%), Gaps = 25/932 (3%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 265 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 324 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || |||||| |||||||| || || ||||| |||| | ||||| ||| Sbjct 325 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 384 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || || ||||||||| |||| || ||||| ||||||| | ||||||| Sbjct 385 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATAAT 444 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGTTT 13550 | |||||||| ||| ||||| ||||||||||| || || ||||||| || |||| | Sbjct 445 CGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAAATC 503 Query 13551 TACAGGAATTATATTAGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||| | | ||| || |||| | |||||| || || || || | ||| Sbjct 504 ACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATAT 562 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACGCAA 13666 | | || || || | | | | |||||| | | | | | |||||||||| || Sbjct 563 TTTGAACAACCTCTTCTG--GTAATTTATTTTCCAACAAGCT-ATAAATTAAACAATTAA 619 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGC 13725 |||| || | || |||||||||||||| | ||| || ||||||||| || || Sbjct 620 AATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTA 679 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || || | ||||||| ||||||||||||||| || ||| ||| |||||||| Sbjct 680 ATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 738 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCAT 13845 || || ||| |||| | || ||| |||| || | | | | || ||||||| Sbjct 739 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGA-GTTCGTATCATT--TATCCAT 795 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || |||||| | ||| ||||| || || |||| || |||| |||||| Sbjct 796 TTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAA 855 Query 13906 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 | | ||||||| | ||| || ||||||| | ||| ||||| |||||||| Sbjct 856 TTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAG 915 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14025 ||||| ||||| | |||||| |||||| ||||||| | | ||||| ||||| | Sbjct 916 TGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTA-C 974 Query 14026 TCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 | | ||||| || || || || ||||| || || |||||||||||||||||||| Sbjct 975 TTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAA 1034 Query 14085 TGCCA--ATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAA-TCGG 14140 ||| | | ||||||| ||||| | || || || | || | |||||| || || Sbjct 1035 TGCTAGCACATGTTTT--ATAAAATGTTTTTCATTTACATTTAA--TTTTTCAAAGTCTT 1090 Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200 ||||| | || | ||||| ||| ||| | |||||||| || |||||||||||| Sbjct 1091 TCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTAT 1150 Query 14201 ACATTACCCATATTTCTTTATATAATATAGGA 14232 | | ||||| ||| ||| | |||||| Sbjct 1151 AAAAATTCCATACTTCAGGATACATAATAGGA 1182 >seq8161 Length=638 Score = 107 bits (118), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 540 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 481 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || |||||| |||||||| || || ||||| |||| | ||||| ||| Sbjct 480 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 421 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || || ||||||||| |||| || ||||| ||||||| | ||||||| Sbjct 420 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATAAT 361 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTA 13546 | |||||||| ||| ||||| |||||||||| ||| || ||||||| || |||| Sbjct 360 CGATCAGCAACAAATTCAATGTATTGAGACA-TAAGTCTTGAATTCATTCCAATTA 306 >seq3553 Length=1395 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1176 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1235 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || |||||| |||||||| || || ||||| |||| | ||||| ||| Sbjct 1236 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 1295 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || || ||||||||| |||| || ||||| ||||||| | ||||||| Sbjct 1296 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATAAT 1355 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACAT 13523 | |||||||| ||| ||||| ||||||||||| Sbjct 1356 CGATCAGCAACAAATTCAATGTATTGAGACAT 1387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478524848571600