Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2587 226 4e-54 seq3686 178 2e-39 seq9906 149 8e-31 >seq2587 Length=1884 Score = 226 bits (250), Expect = 4e-54 Identities = 727/1115 (65%), Gaps = 44/1115 (4%) Strand=Plus/Plus Query 71130 ATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA---ATATTACT 71186 |||||||||||| || ||||| ||| || || ||| ||||| || ||||| Sbjct 786 ATGAGGATTAACAACAAAGAATTCACCACTTAAAAC---ACGTCTGTAATAAATGTTACT 842 Query 71187 GGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 71246 ||||| ||||| | || ||||||||||| |||||||| | ||||| || || ||||| Sbjct 843 TGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAAGCTGTTGGCAT 902 Query 71247 AGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTC 71306 |||||| | | ||| |||||| | || ||| | ||||| | ||||| | || Sbjct 903 AGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTTTTTAATAAATC 962 Query 71307 CCAATTCCAA-AGATCCGATGGTACAA---CNNNNNNNNNNNNNNNNNNNNNNATGCCGT 71362 ||||| |||| | | || ||| | || || | Sbjct 963 CCAATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTGTAATATTCCTT 1021 Query 71363 TACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAA 71421 || || | | | | || ||||| || |||||||| | || || | |||| | Sbjct 1022 GGCTTGCTGGACTACCTTG-ATATGATTCATATGGTCCACTTACTTGTGCCAATTCAACA 1080 Query 71422 CTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAAT-CTTCTTATTGAGATCTTGTGC 71480 | ||||| || ||||||| || ||||| || || ||||| ||| | |||| || Sbjct 1081 GACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGC 1139 Query 71481 TTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCC 71540 ||| ||| ||||||| |||| || ||||| | |||||||||||||| || || Sbjct 1140 TTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCC 1199 Query 71541 AATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATT 71600 || || |||||||| ||||| ||||| || |||| |||||| || ||||||||||| Sbjct 1200 TATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATT 1259 Query 71601 AATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGA-CCACATCCTTTAGTTTGA 71659 | || |||||||||| | |||||| | || || ||| | | ||| | || ||| Sbjct 1260 TCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCATATAATTTTT 1318 Query 71660 GAAAATCAAA-----TCTCCCATCTAT-TACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 ||||| ||| | | ||||| ||||| | || |||| || || | || Sbjct 1319 TAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAAT 1378 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 ||||||| ||||| |||| || | ||||| ||||||||| || |||||| | Sbjct 1379 TACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATTAATTACTGC 1438 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 | || || ||||||||||||| |||||| || ||||| ||||| ||||| | | Sbjct 1439 ATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAACA 1498 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC-TTTCCAGACGACTCGAGCC 71892 || | || ||||||||| || || || || || || ||| | || | || Sbjct 1499 TATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCCATAAATCTTGTGCA 1558 Query 71893 TTTATTATATTCTTGTATCTC----TTTTCTCTTTCGTATTGTGTATATAA-TCGTTCGA 71947 ||| | || || || | |||||| |||||||| ||||||||| | ||| | Sbjct 1559 AGAATTGTTTTTTT---TCCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTTCAA 1615 Query 71948 ACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACA-CATCAATGACCAC 72006 | || || ||||| | | ||| || |||||||| || || || ||| || | ||| Sbjct 1616 ATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACCATTAAAGTCCAG 1675 Query 72007 TCTCCATCATCATTTACTC-GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 72065 | || || ||||||| ||||||||| | |||||| | ||||| ||| ||||| Sbjct 1676 TTCTTATTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAA 1735 Query 72066 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 72125 ||| | | ||| || || || || ||| ||| | | ||| | || | | ||| Sbjct 1736 ATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAAT 1795 Query 72126 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT----TCCTC 72181 ||| |||||||| ||||| | |||| || | | | | ||| || ||| | Sbjct 1796 ATCTGAATGCCATGGTTCAACATATACAGCAAAA------GAACTTTTCTTTTCCTCCAC 1849 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | ||||||| ||||| || || | |||| ||||| Sbjct 1850 CTTGATCTACATATCTTGCTGTATAATTAAAAACT 1884 >seq3686 Length=1345 Score = 178 bits (196), Expect = 2e-39 Identities = 365/540 (68%), Gaps = 2/540 (0%) Strand=Plus/Plus Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 || |||||||||||||| ||||| || ||| || | || | | | | ||| Sbjct 634 CCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTTTGTTTT 693 Query 42146 TTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205 |||| ||||||||| | ||| |||| ||| || |||||||| || ||| Sbjct 694 TTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCATTA 753 Query 42206 GCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCC 42265 || | || ||| || || || | | |||| |||||| || ||||| || Sbjct 754 GCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATAATGCT 813 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 42325 || ||||||| || || |||| || |||| ||| | || | | || || | Sbjct 814 TTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCA 873 Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || ||| ||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 874 TCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCT 933 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 || ||||| | || || | |||| || | | ||||||||| | ||||| | Sbjct 934 ATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATTTACTA 993 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 ||||||||||| |||||||| ||||| ||||||||||| || | |||||||||||| Sbjct 994 GCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATA 1053 Query 42506 AAATATTTTTCGTCCGGTGTTAATTTATTCCAA-TCATTGATATCTTTAGATATATCTAC 42564 |||| |||||| | ||||||| ||| || || || | ||| | |||| ||||| Sbjct 1054 AAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTAT 1112 Query 42565 TTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATA 42624 |||||| | ||||||||||| || || || |||||||| | |||||| | ||| |||| Sbjct 1113 TTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCAGGATA 1172 >seq9906 Length=546 Score = 149 bits (164), Expect = 8e-31 Identities = 224/316 (71%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 |||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | || || Sbjct 468 ACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACC 409 Query 72360 CTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 ||||| |||| |||| | ||| || ||| || |||||||||| | | | Sbjct 408 TTCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGGTG 350 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||||| ||||||||| ||||||| ||| || ||||| |||||| |||| || || | Sbjct 349 TTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGAT 290 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 | || || | ||| ||| | ||| | ||||||||||| | || | |||||| | Sbjct 289 AAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATA 230 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 ||||||||| | ||||| || || ||||| || || ||||| || |||| || | Sbjct 229 AATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATG 170 Query 72599 TTTTAAAACCAAAATA 72614 ||||||| |||||||| Sbjct 169 TTTTAAATCCAAAATA 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671049519024400