Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4327 120 2e-22 >seq4327 Length=1153 Score = 120 bits (132), Expect = 2e-22 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | ||| || |||||||| ||||| || || || |||| | |||||| Sbjct 516 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 575 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-ACA 15273 |||||||| |||||| | || || | |||||| || |||||||||||||| || Sbjct 576 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 635 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 | ||||||| || ||| |||| || ||||| ||| ||||| | || || ||||| Sbjct 636 ATTTTTGCT-TTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 694 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA--TAAAATTTTAATACTT 15388 || || | ||||||||||| |||||||| || | ||| ||||| | |||| || Sbjct 695 TCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAACGTAAAAAGTAAATAATT 751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362132013709290