Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq4327 96.9 2e-15 >seq4327 Length=1153 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| || || ||||||||||| || || || ||||| || | | || || Sbjct 516 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 575 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 ||||| |||||| || ||||| | ||| || || | ||| || |||||||| || | Sbjct 576 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 635 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | || ||| || ||| ||| || || |||| ||| || ||||| || ||| Sbjct 636 ATTTTTGC---TTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTT 692 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || | |||||||| || |||||||| || Sbjct 693 TTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318736068259620